Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FTX54_RS00525 Genome accession   NZ_CP144914
Coordinates   112635..114041 (+) Length   468 a.a.
NCBI ID   WP_147804624.1    Uniprot ID   A0A5C7FGH2
Organism   Alkalicoccus halolimnae strain BZ-SZ-XJ29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107635..119041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX54_RS00505 (FTX54_000505) - 107730..108203 (+) 474 WP_147804629.1 CtsR family transcriptional regulator -
  FTX54_RS00510 (FTX54_000510) - 108216..108764 (+) 549 WP_147804628.1 UvrB/UvrC motif-containing protein -
  FTX54_RS00515 (FTX54_000515) - 108761..109855 (+) 1095 WP_147804627.1 protein arginine kinase -
  FTX54_RS00520 (FTX54_000520) clpC 109855..112296 (+) 2442 WP_147804626.1 ATP-dependent protease ATP-binding subunit ClpC -
  FTX54_RS00525 (FTX54_000525) radA 112635..114041 (+) 1407 WP_147804624.1 DNA repair protein RadA Machinery gene
  FTX54_RS00530 (FTX54_000530) disA 114016..115098 (+) 1083 WP_147804623.1 DNA integrity scanning diadenylate cyclase DisA -
  FTX54_RS00535 (FTX54_000535) - 115277..116371 (+) 1095 WP_147804622.1 PIN/TRAM domain-containing protein -
  FTX54_RS00540 (FTX54_000540) ispD 116392..117099 (+) 708 WP_147804621.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FTX54_RS00545 (FTX54_000545) ispF 117096..117572 (+) 477 WP_147804620.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 50801.43 Da        Isoelectric Point: 6.6986

>NTDB_id=935099 FTX54_RS00525 WP_147804624.1 112635..114041(+) (radA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
MAKQKTKFVCQDCGYESTKWMGKCPGCHSWNTLVEEREAAPKTQRRGFSTTDGPRKIKAEPITKIERRDEARSSTHINEL
NRVLGGGIVPGSLVLFGGDPGIGKSTLLLQVSAMVAGNKKRVLYISGEESVKQTKLRADRLGIEEDDLFVLAETEVAVIE
QVIEEMQPALVVIDSIQTVHQEDVTSAPGSVSQVRECTASFMRIAKTKGIAIFLVGHVTKQGAIAGPRILEHMVDTVLYF
EGDQHHTYRILRAVKNRFGSTNEIGIFEMKESGLEEVLNPSEIFLEERSAGAAGSAVVASMEGTRTVLVEIQSLISPTSF
GNPRRMATGVDHNRISLIMAVLEKRVGMMLQNQDAYIKVAGGVRLDEPSIDLAITVAIASSFRDVATEAGDVIIGEVGLT
GEIRRVSRIEQRVMEAAKLGFTRVIVPQKCLEGWKAPSGIQVVGVKTVAEALEVTLGGKTSGTPSFEL

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=935099 FTX54_RS00525 WP_147804624.1 112635..114041(+) (radA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
ATGGCAAAACAAAAAACAAAGTTTGTCTGCCAGGACTGCGGTTACGAATCAACGAAATGGATGGGCAAATGCCCGGGATG
CCACAGCTGGAACACGCTCGTCGAAGAACGGGAAGCCGCTCCTAAAACGCAGCGGCGCGGTTTTTCCACTACGGATGGTC
CTAGGAAAATAAAAGCGGAACCGATTACGAAAATTGAACGCCGCGATGAAGCCAGGAGCAGCACGCATATCAATGAATTG
AACCGTGTACTCGGAGGAGGCATCGTTCCGGGTTCTTTAGTCTTGTTCGGGGGAGACCCCGGAATCGGCAAATCAACGCT
TCTGCTGCAGGTTTCCGCCATGGTAGCCGGAAATAAAAAGCGGGTGCTTTACATATCAGGAGAGGAATCGGTCAAACAGA
CCAAGCTTCGTGCTGATCGTCTGGGTATTGAAGAGGATGACCTGTTCGTGCTTGCAGAAACAGAGGTTGCGGTCATTGAA
CAGGTGATTGAAGAAATGCAGCCGGCTTTAGTAGTCATTGATTCTATCCAAACGGTGCATCAGGAAGACGTAACGAGTGC
TCCGGGAAGCGTTTCCCAGGTTAGGGAATGCACCGCTTCATTTATGCGGATTGCGAAAACGAAAGGAATTGCTATTTTTC
TTGTCGGCCACGTAACCAAGCAGGGAGCAATAGCCGGTCCGAGAATTTTGGAGCACATGGTCGATACCGTTCTTTATTTT
GAAGGAGACCAGCATCATACGTACCGGATTCTCCGTGCCGTAAAAAATCGCTTCGGGTCCACCAATGAGATCGGTATTTT
TGAAATGAAAGAAAGCGGATTGGAAGAAGTATTGAACCCTTCTGAAATTTTTCTCGAAGAACGTTCGGCTGGAGCTGCCG
GTTCGGCTGTTGTCGCTTCTATGGAAGGGACGCGCACCGTGCTCGTTGAAATTCAGTCCCTGATTTCTCCGACGAGCTTC
GGGAACCCGCGGCGTATGGCTACAGGCGTGGATCATAACCGTATTTCCCTGATTATGGCAGTGCTCGAAAAGCGTGTCGG
CATGATGCTGCAGAATCAGGATGCTTATATTAAAGTTGCCGGCGGTGTGAGATTGGACGAGCCGTCTATTGATCTGGCTA
TTACAGTAGCCATCGCTTCCAGTTTCCGCGATGTAGCAACGGAAGCCGGAGATGTGATTATTGGCGAAGTAGGACTGACC
GGAGAAATAAGACGGGTCTCACGAATTGAACAAAGAGTTATGGAAGCAGCAAAACTTGGCTTCACGCGCGTTATTGTCCC
GCAGAAATGTCTGGAAGGCTGGAAGGCACCATCCGGCATCCAGGTAGTCGGAGTCAAAACCGTAGCAGAAGCCCTTGAAG
TGACGTTAGGAGGGAAAACTAGTGGAACACCATCGTTCGAATTATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7FGH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.895

98.077

0.705
  radA Streptococcus mitis NCTC 12261

59.603

96.795

0.577
  radA Streptococcus pneumoniae Rx1

59.603

96.795

0.577
  radA Streptococcus pneumoniae D39

59.603

96.795

0.577
  radA Streptococcus pneumoniae R6

59.603

96.795

0.577
  radA Streptococcus pneumoniae TIGR4

59.603

96.795

0.577
  radA Streptococcus mitis SK321

59.603

96.795

0.577