Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8617_RS06915 Genome accession   NZ_AP028362
Coordinates   1338434..1339402 (+) Length   322 a.a.
NCBI ID   WP_234729013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10611     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333434..1344402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8617_RS06890 (B10611_13610) cdsA 1334344..1335069 (-) 726 WP_002884177.1 phosphatidate cytidylyltransferase -
  R8617_RS06895 (B10611_13620) - 1335078..1335416 (-) 339 WP_002875268.1 hypothetical protein -
  R8617_RS06900 (B10611_13630) - 1335418..1336725 (-) 1308 WP_002864240.1 NFACT RNA binding domain-containing protein -
  R8617_RS06905 (B10611_13640) mobA 1336787..1337362 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R8617_RS06910 (B10611_13650) pldA 1337359..1338348 (+) 990 WP_002867311.1 phospholipase A -
  R8617_RS06915 (B10611_13660) ceuB 1338434..1339402 (+) 969 WP_234729013.1 ABC transporter permease Machinery gene
  R8617_RS06920 (B10611_13670) ceuC 1339395..1340333 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  R8617_RS06925 (B10611_13680) ceuD 1340330..1341085 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  R8617_RS06930 (B10611_13690) ceuB 1341098..1342090 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8617_RS06940 (B10611_13700) - 1342316..1342870 (-) 555 WP_002867306.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35437.40 Da        Isoelectric Point: 9.6678

>NTDB_id=93509 R8617_RS06915 WP_234729013.1 1338434..1339402(+) (ceuB) [Campylobacter jejuni strain BCH-10611]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGIIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIIARLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=93509 R8617_RS06915 WP_234729013.1 1338434..1339402(+) (ceuB) [Campylobacter jejuni strain BCH-10611]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGATAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTGCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.447

100

0.984

Multiple sequence alignment