Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   ACEN2Z_RS12520 Genome accession   NZ_CP168221
Coordinates   2539578..2541683 (+) Length   701 a.a.
NCBI ID   WP_001058988.1    Uniprot ID   Q8NUR7
Organism   Staphylococcus aureus strain C92     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 2534578..2546683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN2Z_RS12495 (ACEN2Z_12495) - 2534601..2534819 (+) 219 WP_000011687.1 sterile alpha motif-like domain-containing protein -
  ACEN2Z_RS12500 (ACEN2Z_12500) - 2535208..2535639 (+) 432 WP_000455861.1 CHAP domain-containing protein -
  ACEN2Z_RS12505 (ACEN2Z_12505) - 2535777..2537057 (-) 1281 WP_001180324.1 hydroxymethylglutaryl-CoA reductase, degradative -
  ACEN2Z_RS12510 (ACEN2Z_12510) - 2537311..2538477 (+) 1167 WP_000151983.1 hydroxymethylglutaryl-CoA synthase -
  ACEN2Z_RS12515 (ACEN2Z_12515) - 2538648..2539169 (-) 522 WP_000455992.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACEN2Z_RS12520 (ACEN2Z_12520) clpE 2539578..2541683 (+) 2106 WP_001058988.1 ATP-dependent Clp protease ATP-binding subunit ClpL Regulator
  ACEN2Z_RS12525 (ACEN2Z_12525) - 2541752..2541922 (-) 171 WP_000111118.1 FeoB-associated Cys-rich membrane protein -
  ACEN2Z_RS12530 (ACEN2Z_12530) feoB 2541935..2543929 (-) 1995 WP_000432934.1 ferrous iron transport protein B -
  ACEN2Z_RS12535 (ACEN2Z_12535) - 2543941..2544168 (-) 228 WP_000932073.1 FeoA family protein -

Sequence


Protein


Download         Length: 701 a.a.        Molecular weight: 77836.22 Da        Isoelectric Point: 4.6056

>NTDB_id=935083 ACEN2Z_RS12520 WP_001058988.1 2539578..2541683(+) (clpE) [Staphylococcus aureus strain C92]
MNNGFFNSDFDSIFRRMMQDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSAQAFQQAAQRQQGQQGGNGNY
LEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISV
DISSLEAGTQYRGAFEENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
YRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITA
AHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADDIQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPV
SQMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI
NFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDV
SQDAKDWLIEEGYDEELGARPLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=935083 ACEN2Z_RS12520 WP_001058988.1 2539578..2541683(+) (clpE) [Staphylococcus aureus strain C92]
ATGAATAACGGTTTTTTCAATAGCGACTTTGATTCAATTTTCCGAAGAATGATGCAAGATATGCAAGGTTCAAATCAAGT
CGGTAACAAAAAGTACTATATTAATGGTAAAGAAGTTTCACCTGAAGAACTAGCGCAACTCACACAACAAGGTGGCAATC
ACTCTGCTGAACAAAGTGCGCAAGCTTTTCAACAAGCAGCACAAAGACAACAAGGGCAACAAGGTGGCAACGGCAATTAT
TTAGAACAAATTGGTCGTAACCTTACGCAAGAAGCACGTGACGGTTTATTAGATCCAGTCATTGGTCGTGATAAAGAAAT
TCAAGAAACTGCTGAAGTCTTAAGTAGACGAACTAAAAACAATCCTATATTAGTTGGAGAAGCTGGTGTTGGTAAAACTG
CGATTGTTGAAGGTTTAGCACAGGCAATCGTTGAAGGAAATGTACCAGCAGCAATCAAAGACAAAGAAATTATTTCTGTA
GATATTTCATCATTAGAAGCTGGAACGCAATATCGTGGTGCTTTTGAAGAAAATATTCAAAAATTAATCGAAGGTGTTAA
ATCTTCACAAAATGCCGTACTATTCTTTGATGAAATCCATCAAATTATCGGTTCAGGTGCCACAGGAAGTGATTCAGGTA
GCAAAGGGTTATCTGATATTTTGAAACCTGCATTAAGTCGTGGTGAGATTTCTATTATTGGTGCAACAACACAAGATGAA
TATCGAAACAATATTCTTAAAGATGCTGCATTAACGCGCAGATTTAATGAAGTACTTGTTAATGAACCAAGTGCTAAAGA
TACTGTTGAAATTTTAAAAGGTATTCGCGAAAAATTCGAAGAACACCATCAAGTAAAATTACCAGATGACGTATTAAAAG
CATGTGTTGACTTATCAATTCAATATATTCCACAACGATTATTACCAGATAAAGCAATCGATGTGTTAGATATTACAGCA
GCACATTTATCTGCGCAAAGTCCAGCTGTCGATAAAGTTGAAACTGAAAAACGAATTTCTGAATTAGAAAATGATAAACG
TAAAGCGGTAAGTGCTGAAGAATATAAAAAAGCTGACGACATTCAAAATGAAATCAAATCATTACAAGATAAATTAGAAA
ATAGTAATGGTGAACATACTGCTGTTGCTACAGTTCATGATATTTCAGATACTATTCAACGATTAACTGGTATTCCAGTT
TCTCAAATGGATGATAACGATATTGAACGTTTAAAAAATATTTCTAATCGTTTAAGAAGTAAAATCATAGGTCAAGATCA
AGCTGTAGAAATGGTTTCACGTGCAATTCGCCGTAATCGTGCTGGGTTTGATGACGGCAACCGTCCAATTGGCAGTTTCC
TATTTGTTGGCCCTACTGGTGTTGGTAAAACAGAGCTTGCTAAACAATTAGCAATTGATCTATTTGGTAATAAAGATGCA
CTGATTCGACTTGATATGAGTGAATATAGTGACACAACAGCTGTTTCAAAAATGATTGGTACAACTGCTGGTTATGTCGG
TTATGATGACAATTCAAATACGTTAACTGAAAAAGTACGCCGTAATCCATACTCAGTCATTCTATTTGATGAAATCGAAA
AAGCAAATCCACAAATTTTAACATTGTTATTACAAGTAATGGATGATGGTAATTTGACTGATGGTCAAGGTAATGTCATC
AACTTTAAAAATACAATTATTATTTGTACATCAAATGCTGGCTTTGGCAATGGCAATGACGCTGAAGAAAAAGATATTAT
GCACGAAATGAAAAAATTCTTCCGCCCTGAATTCCTTAACCGCTTCAACGGCATCGTTGAATTCTTACATTTAGATAAAG
ATGCATTGCAAGATATCGTCAACTTATTATTAGACGATGTACAAGTTACATTAGATAAAAAAGGTATTACGATGGACGTT
TCTCAAGATGCGAAAGATTGGTTAATTGAAGAAGGCTATGATGAAGAATTAGGTGCACGTCCATTAAGACGTATTGTTGA
ACAGCAAGTACGTGACAAAATTACAGATTATTATCTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATA
ACGAATTAGTCGTAAAAGGTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8NUR7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

48.834

91.726

0.448

  clpE Streptococcus pneumoniae Rx1

48.298

88.017

0.425

  clpE Streptococcus pneumoniae D39

48.298

88.017

0.425

  clpE Streptococcus pneumoniae R6

48.298

88.017

0.425

  clpE Streptococcus pneumoniae TIGR4

48.298

88.017

0.425

  clpC Lactococcus lactis subsp. cremoris KW2

46.815

89.586

0.419

  clpC Bacillus subtilis subsp. subtilis str. 168

44.564

93.153

0.415

  clpC Streptococcus thermophilus LMD-9

44.392

90.3

0.401

  clpC Streptococcus thermophilus LMG 18311

44.076

90.3

0.398

  clpC Streptococcus pneumoniae TIGR4

44.175

88.16

0.389

  clpC Streptococcus pneumoniae Rx1

44.175

88.16

0.389

  clpC Streptococcus pneumoniae D39

44.175

88.16

0.389

  clpC Streptococcus mutans UA159

43.577

87.732

0.382

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

41.294

92.582

0.382