Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MWM15_RS14715 Genome accession   NZ_AP025675
Coordinates   3067091..3067720 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Rb-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3062091..3072720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM15_RS14700 (TRECRb3_28280) helD 3062333..3064387 (-) 2055 WP_001541157.1 DNA helicase IV -
  MWM15_RS14705 (TRECRb3_28290) yccF 3064510..3064956 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MWM15_RS14710 (TRECRb3_28300) yccS 3064966..3067128 (+) 2163 WP_000875067.1 YccS family putative transporter -
  MWM15_RS14715 (TRECRb3_28310) sxy/tfoX 3067091..3067720 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MWM15_RS14720 (TRECRb3_28320) sulA 3067939..3068448 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  MWM15_RS14725 (TRECRb3_28340) ompA 3068804..3069844 (+) 1041 WP_001313715.1 porin OmpA -
  MWM15_RS14730 (TRECRb3_28350) matP 3069920..3070372 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  MWM15_RS14735 (TRECRb3_28360) ycbZ 3070558..3072318 (+) 1761 WP_000156496.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=93506 MWM15_RS14715 WP_000839153.1 3067091..3067720(-) (sxy/tfoX) [Escherichia coli strain Rb-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=93506 MWM15_RS14715 WP_000839153.1 3067091..3067720(-) (sxy/tfoX) [Escherichia coli strain Rb-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment