Detailed information NTG0093499

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8617_RS05905
• Genome accession: NZ_AP028362
• Coordinates: 1135752..1136702 (+)
• Length: 316 a.a.
• NCBI ID: WP_002867402.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10611
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1130752..1141702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8617_RS05885 (B10611_11600)	galE	1131570..1132544 (-)	975	WP_146263329.1	UDP-glucose 4-epimerase GalE	-
R8617_RS05890 (B10611_11610)	-	1132541..1133839 (-)	1299	WP_002867405.1	UDP-glucose dehydrogenase family protein	-
R8617_RS05895 (B10611_11620)	-	1133845..1134801 (-)	957	WP_002867404.1	UDP-glucuronic acid decarboxylase family protein	-
R8617_RS05900 (B10611_11630)	-	1134872..1135693 (-)	822	WP_002867403.1	glycosyltransferase family 2 protein	-
R8617_RS05905 (B10611_11640)	waaF	1135752..1136702 (+)	951	WP_002867402.1	lipopolysaccharide heptosyltransferase II	Regulator
R8617_RS05910 (B10611_11650)	-	1136688..1137452 (-)	765	WP_002867401.1	glycosyltransferase family 25 protein	-
R8617_RS05915 (B10611_11660)	gmhA	1137452..1138012 (-)	561	WP_002867400.1	D-sedoheptulose 7-phosphate isomerase	-
R8617_RS05920 (B10611_11670)	rfaE1	1138009..1139394 (-)	1386	WP_002867399.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8617_RS05925 (B10611_11680)	rfaD	1139387..1140340 (-)	954	WP_234728994.1	ADP-glyceromanno-heptose 6-epimerase	-
R8617_RS05930 (B10611_11690)	gmhB	1140341..1140902 (-)	562	Protein_1144	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8617_RS05935 (B10611_11700)	-	1140983..1141285 (+)	303	WP_002852762.1	c-type cytochrome	-
R8617_RS05940 (B10611_11710)	ccoS	1141308..1141514 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36324.91 Da
• Isoelectric Point: 10.3207

>NTDB_id=93499 R8617_RS05905 WP_002867402.1 1135752..1136702(+) (waaF) [Campylobacter jejuni strain BCH-10611]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI

Nucleotide

• Length: 951 bp

>NTDB_id=93499 R8617_RS05905 WP_002867402.1 1135752..1136702(+) (waaF) [Campylobacter jejuni strain BCH-10611]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	92.652	99.051	0.918