Detailed information NTG0934867

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: V4Y05_RS10105
• Genome accession: NZ_CP144767
• Coordinates: 2220111..2222342 (+)
• Length: 743 a.a.
• NCBI ID: WP_053260193.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. chlororaphis strain ATCC 9446
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2215111..2227342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4Y05_RS10080 (V4Y05_10080)	-	2216232..2216891 (+)	660	WP_007931646.1	transglutaminase family protein	-
V4Y05_RS10085 (V4Y05_10085)	-	2216934..2217557 (+)	624	WP_053260191.1	glutathione S-transferase family protein	-
V4Y05_RS10090 (V4Y05_10090)	-	2217690..2218622 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
V4Y05_RS10095 (V4Y05_10095)	-	2218619..2219398 (+)	780	WP_007931651.1	ABC transporter permease	-
V4Y05_RS10100 (V4Y05_10100)	-	2219447..2219962 (-)	516	WP_053260192.1	DUF2062 domain-containing protein	-
V4Y05_RS10105 (V4Y05_10105)	comA	2220111..2222342 (+)	2232	WP_053260193.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
V4Y05_RS10110 (V4Y05_10110)	exbB	2222445..2223080 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
V4Y05_RS10115 (V4Y05_10115)	-	2223077..2223505 (+)	429	WP_007931660.1	biopolymer transporter ExbD	-
V4Y05_RS10120 (V4Y05_10120)	lpxK	2223505..2224515 (+)	1011	WP_053260194.1	tetraacyldisaccharide 4'-kinase	-
V4Y05_RS10125 (V4Y05_10125)	-	2224538..2224723 (+)	186	WP_007931663.1	Trm112 family protein	-
V4Y05_RS10130 (V4Y05_10130)	kdsB	2224720..2225484 (+)	765	WP_053260195.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
V4Y05_RS10135 (V4Y05_10135)	-	2225484..2225948 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
V4Y05_RS10140 (V4Y05_10140)	murB	2225945..2226964 (+)	1020	WP_053260196.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81142.21 Da
• Isoelectric Point: 9.7323

>NTDB_id=934867 V4Y05_RS10105 WP_053260193.1 2220111..2222342(+) (comA) [Pseudomonas chlororaphis subsp. chlororaphis strain ATCC 9446]
MRTGMLALAAGLLCLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQWALDDRLAEPLDGQTHWLEG
RVVGLPQQTEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLATTRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVAHLDLMLLSHADADHAGGA
DAISRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=934867 V4Y05_RS10105 WP_053260193.1 2220111..2222342(+) (comA) [Pseudomonas chlororaphis subsp. chlororaphis strain ATCC 9446]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTATGCCTGCGCTTTTTGCCGGCGCTACCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTCTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGATGATCGTTTGGCGGAACCGCTCGACGGGCAGACTCACTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGACCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGCCGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAATTGCTGGCCACCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGTGGACTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGCGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGTGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGTTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCACCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATTTCGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAG
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCATCACGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624