Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V3H56_RS23430 Genome accession   NZ_CP144763
Coordinates   5309598..5310965 (-) Length   455 a.a.
NCBI ID   WP_047736300.1    Uniprot ID   A0A423G0Y4
Organism   Pseudomonas sp. MS646     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5304598..5315965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H56_RS23405 (V3H56_23405) - 5304801..5305514 (+) 714 WP_042730731.1 GntR family transcriptional regulator -
  V3H56_RS23410 (V3H56_23410) yjiA 5305506..5306474 (-) 969 WP_047736297.1 GTPase -
  V3H56_RS23415 (V3H56_23415) - 5306750..5306947 (-) 198 WP_042730733.1 YbdD/YjiX family protein -
  V3H56_RS23420 (V3H56_23420) - 5306964..5309030 (-) 2067 WP_338473911.1 carbon starvation CstA family protein -
  V3H56_RS23425 (V3H56_23425) - 5309189..5309545 (+) 357 WP_047736299.1 PilZ domain-containing protein -
  V3H56_RS23430 (V3H56_23430) radA 5309598..5310965 (-) 1368 WP_047736300.1 DNA repair protein RadA Machinery gene
  V3H56_RS23435 (V3H56_23435) - 5311009..5311557 (-) 549 WP_338473912.1 ankyrin repeat domain-containing protein -
  V3H56_RS23440 (V3H56_23440) katB 5311654..5313195 (-) 1542 WP_053144265.1 catalase KatB -
  V3H56_RS23445 (V3H56_23445) mscL 5313475..5313888 (+) 414 WP_047736302.1 large-conductance mechanosensitive channel protein MscL -
  V3H56_RS23450 (V3H56_23450) - 5314006..5314782 (-) 777 WP_338473913.1 ferredoxin--NADP reductase -
  V3H56_RS23455 (V3H56_23455) - 5315046..5315786 (+) 741 WP_234407976.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48730.19 Da        Isoelectric Point: 6.8987

>NTDB_id=934813 V3H56_RS23430 WP_047736300.1 5309598..5310965(-) (radA) [Pseudomonas sp. MS646]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=934813 V3H56_RS23430 WP_047736300.1 5309598..5310965(-) (radA) [Pseudomonas sp. MS646]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGTTCGACCTTTCCCAAATGGGCCGGCCAGTGCGGTGAGTG
CGGAGCCTGGAACACCCTGACTGAAACCATGGTGGAGAGCGGCGGTGCGGCGGCGCCTGCCGGGCGTACGGGGTGGGCCG
GCCAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAAGAAATCCCGCGTTTCTCCACGGCCTCCGGGGAATTG
GATCGGGTGCTGGGAGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGGGGCGACCCGGGCATCGGCAAGTCCACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCACGCGCATGCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTCG
CCATGCGTGCCCGGCGCCTGGGCTTGCCCCAGGATCAGTTGCGGGTCATGACCGAGACCTGCATCGAAACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTGCGCGAAAGCGCGGCGCTGTTGGTGCGCTACGCGAAACAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGCGCGCTGGCGGGACCGCGAGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTCAATGAGCTGGGAGTGTTCGG
CATGACCGACCGGGGCCTGAAGGAGGTCTCCAACCCGTCGGCCATCTTCCTGACCCGTGCCCAGGAAGAAGTGCCGGGCA
GCGTGGTCATGGCGACCTGGGAGGGGACGCGCCCGATGTTGGTCGAAGTGCAGGCGCTGGTGGACGACAGCCACCTGGCC
AATCCGCGCCGCGTGACCCTGGGCCTGGATCAGAACCGACTGGCCATGCTGCTGGCCGTGCTGCACCGGCACGGGGGGAT
CCCGACCCATGACCAGGATGTTTTCCTCAACGTAGTGGGCGGGGTAAAGGTGCTGGAAACCGCCTCCGACCTGGCCTTGA
TGGCGGCGGTCATGTCGAGCCTGCGCAATCGACCGCTGCCCCACGACCTGCTGGTATTCGGTGAAGTGGGGTTGTCGGGT
GAAGTCCGGCCGGTGCCCAGCGGGCAGGAGCGACTCAAGGAGGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCCCCGAAGGAAGCCCCGGCAGGGTTGCAGATTATTGCCGTGACACGCCTGGAGCAGGCGTTGGATTCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423G0Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.087

100

0.466
  radA Streptococcus pneumoniae D39

46.087

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.466
  radA Streptococcus pneumoniae R6

46.087

100

0.466
  radA Streptococcus mitis NCTC 12261

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462