Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   V4U93_RS09590 Genome accession   NZ_CP144755
Coordinates   1881556..1882245 (+) Length   229 a.a.
NCBI ID   WP_076645336.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1876556..1887245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS09570 (V4U93_09570) - 1876998..1877549 (+) 552 WP_061827366.1 isochorismatase family cysteine hydrolase -
  V4U93_RS09575 (V4U93_09575) fusA 1878119..1880206 (-) 2088 WP_016265721.1 elongation factor G -
  V4U93_RS09580 (V4U93_09580) rpsG 1880302..1880772 (-) 471 WP_004270185.1 30S ribosomal protein S7 -
  V4U93_RS09585 (V4U93_09585) rpsL 1880862..1881275 (-) 414 WP_004270179.1 30S ribosomal protein S12 -
  V4U93_RS09590 (V4U93_09590) comC 1881556..1882245 (+) 690 WP_076645336.1 A24 family peptidase Machinery gene
  V4U93_RS09595 (V4U93_09595) - 1882249..1882821 (-) 573 WP_061827365.1 isochorismatase family protein -
  V4U93_RS09600 (V4U93_09600) rpoC 1882995..1886639 (-) 3645 WP_035147345.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26190.50 Da        Isoelectric Point: 7.2085

>NTDB_id=934740 V4U93_RS09590 WP_076645336.1 1881556..1882245(+) (comC) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=934740 V4U93_RS09590 WP_076645336.1 1881556..1882245(+) (comC) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)

Type IV leader peptidase family (Peptidase_A24)

(99-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

97.38

100

0.974