Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   V4U93_RS07175 Genome accession   NZ_CP144755
Coordinates   1410462..1411469 (-) Length   335 a.a.
NCBI ID   WP_061827023.1    Uniprot ID   A0AAE8J400
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405462..1416469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS07135 (V4U93_07135) - 1405797..1406255 (-) 459 WP_035145008.1 hypothetical protein -
  V4U93_RS07140 (V4U93_07140) - 1406310..1407506 (-) 1197 WP_011374993.1 acetate kinase -
  V4U93_RS07145 (V4U93_07145) - 1407528..1408538 (-) 1011 WP_338453560.1 class I SAM-dependent methyltransferase -
  V4U93_RS07150 (V4U93_07150) - 1408662..1409000 (-) 339 WP_035145011.1 hypothetical protein -
  V4U93_RS07155 (V4U93_07155) comGF 1408963..1409475 (-) 513 WP_035145013.1 competence type IV pilus minor pilin ComGF Machinery gene
  V4U93_RS07160 (V4U93_07160) comGE 1409450..1409755 (-) 306 WP_016265375.1 hypothetical protein Machinery gene
  V4U93_RS07165 (V4U93_07165) comGD 1409742..1410194 (-) 453 WP_105300046.1 competence type IV pilus minor pilin ComGD Machinery gene
  V4U93_RS07170 (V4U93_07170) comGC 1410166..1410465 (-) 300 WP_025016383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V4U93_RS07175 (V4U93_07175) comGB 1410462..1411469 (-) 1008 WP_061827023.1 type II secretion system F family protein Machinery gene
  V4U93_RS07180 (V4U93_07180) comGA 1411462..1412352 (-) 891 WP_025016380.1 competence type IV pilus ATPase ComGA Machinery gene
  V4U93_RS07185 (V4U93_07185) - 1412469..1413200 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  V4U93_RS07190 (V4U93_07190) - 1413291..1413791 (-) 501 WP_016265379.1 VanZ family protein -
  V4U93_RS07195 (V4U93_07195) - 1413888..1414262 (+) 375 WP_011375004.1 hypothetical protein -
  V4U93_RS07205 (V4U93_07205) - 1414449..1415063 (-) 615 WP_016265380.1 hypothetical protein -
  V4U93_RS07210 (V4U93_07210) - 1415060..1415848 (-) 789 WP_061827022.1 hypothetical protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38425.38 Da        Isoelectric Point: 9.5446

>NTDB_id=934733 V4U93_RS07175 WP_061827023.1 1410462..1411469(-) (comGB) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVHFPADYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRHREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=934733 V4U93_RS07175 WP_061827023.1 1410462..1411469(-) (comGB) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGTATAAGTCACGACAACAAGCGCAATTTTATGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTACAACAAGCTTTTGCTTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGTGACAGTCTGGCAGTCAGTTTAGCGCATGTTCATTTTCCGGCTGATTATGTTGGTCAAATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAGCGCCATCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(207-326)

Type II secretion system (T2SS), protein F (T2SSF)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Latilactobacillus sakei subsp. sakei 23K

98.507

100

0.985