Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8614_RS06910 Genome accession   NZ_AP028361
Coordinates   1339144..1340112 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10605     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334144..1345112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8614_RS06885 (B10605_13560) cdsA 1335054..1335779 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8614_RS06890 (B10605_13570) - 1335788..1336126 (-) 339 WP_002852397.1 hypothetical protein -
  R8614_RS06895 (B10605_13580) - 1336128..1337435 (-) 1308 WP_002875975.1 NFACT RNA binding domain-containing protein -
  R8614_RS06900 (B10605_13590) mobA 1337497..1338072 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R8614_RS06905 (B10605_13600) pldA 1338069..1339058 (+) 990 WP_052797130.1 phospholipase A -
  R8614_RS06910 (B10605_13610) ceuB 1339144..1340112 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  R8614_RS06915 (B10605_13620) ceuC 1340105..1341043 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  R8614_RS06920 (B10605_13630) ceuD 1341040..1341795 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  R8614_RS06925 (B10605_13640) ceuB 1341808..1342800 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8614_RS06935 (B10605_13650) - 1343026..1343580 (-) 555 WP_002867306.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=93464 R8614_RS06910 WP_002874446.1 1339144..1340112(+) (ceuB) [Campylobacter jejuni strain BCH-10605]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=93464 R8614_RS06910 WP_002874446.1 1339144..1340112(+) (ceuB) [Campylobacter jejuni strain BCH-10605]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTGCTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment