Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VXE07_RS15735 Genome accession   NZ_CP144725
Coordinates   3231430..3232044 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CI190083     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3226430..3237044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXE07_RS15720 (VXE07_15720) helD 3226654..3228708 (-) 2055 WP_338481704.1 DNA helicase IV -
  VXE07_RS15725 (VXE07_15725) - 3228834..3229280 (+) 447 WP_003035892.1 YccF domain-containing protein -
  VXE07_RS15730 (VXE07_15730) yccS 3229299..3231452 (+) 2154 WP_032941200.1 YccS family putative transporter -
  VXE07_RS15735 (VXE07_15735) sxy/tfoX 3231430..3232044 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  VXE07_RS15740 (VXE07_15740) sulA 3232262..3232771 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  VXE07_RS15745 (VXE07_15745) ompA 3233129..3234187 (+) 1059 WP_003836839.1 porin OmpA -
  VXE07_RS15750 (VXE07_15750) matP 3234278..3234730 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  VXE07_RS15755 (VXE07_15755) - 3234916..3236676 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=934617 VXE07_RS15735 WP_003035889.1 3231430..3232044(-) (sxy/tfoX) [Citrobacter freundii strain CI190083]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=934617 VXE07_RS15735 WP_003035889.1 3231430..3232044(-) (sxy/tfoX) [Citrobacter freundii strain CI190083]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686