Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MWM17_RS13720 Genome accession   NZ_AP025657
Coordinates   2882855..2883484 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain TUM13867     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2877855..2888484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM17_RS13700 (TUM13867_26330) ycbZ 2878257..2880017 (-) 1761 WP_000156482.1 Lon protease family protein -
  MWM17_RS13705 (TUM13867_26340) matP 2880203..2880655 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MWM17_RS13710 (TUM13867_26350) ompA 2880731..2881771 (-) 1041 WP_001309394.1 porin OmpA -
  MWM17_RS13715 (TUM13867_26370) sulA 2882127..2882636 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MWM17_RS13720 (TUM13867_26380) sxy/tfoX 2882855..2883484 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MWM17_RS13725 (TUM13867_26390) yccS 2883447..2885609 (-) 2163 WP_000875041.1 YccS family putative transporter -
  MWM17_RS13730 (TUM13867_26400) yccF 2885619..2886065 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MWM17_RS13735 (TUM13867_26410) helD 2886188..2888242 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=93445 MWM17_RS13720 WP_000839153.1 2882855..2883484(+) (sxy/tfoX) [Escherichia coli strain TUM13867]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=93445 MWM17_RS13720 WP_000839153.1 2882855..2883484(+) (sxy/tfoX) [Escherichia coli strain TUM13867]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment