Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   V4943_RS04370 Genome accession   NZ_CP144685
Coordinates   831408..831878 (+) Length   156 a.a.
NCBI ID   WP_011173283.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB27_delta_csm3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 826408..836878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4943_RS04350 (V4943_04350) ilvC 826908..827921 (-) 1014 WP_011173279.1 ketol-acid reductoisomerase -
  V4943_RS04355 (V4943_04355) ilvN 827918..828430 (-) 513 WP_011173280.1 acetolactate synthase small subunit -
  V4943_RS04360 (V4943_04360) ilvB 828427..830115 (-) 1689 WP_011173281.1 biosynthetic-type acetolactate synthase large subunit -
  V4943_RS04365 (V4943_04365) - 830270..831250 (-) 981 WP_011173282.1 YpdA family putative bacillithiol disulfide reductase -
  V4943_RS04370 (V4943_04370) pilA/pilA1 831408..831878 (+) 471 WP_011173283.1 GspH/FimT family protein Machinery gene
  V4943_RS04375 (V4943_04375) pilA/pilA2 831912..832493 (+) 582 WP_011173284.1 type II secretion system protein Machinery gene
  V4943_RS04380 (V4943_04380) pilA/pilA3 832490..833191 (+) 702 WP_011173285.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V4943_RS04385 (V4943_04385) comZ 833202..834866 (+) 1665 WP_011173286.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  V4943_RS04390 (V4943_04390) pilA/pilA4 835097..835492 (+) 396 WP_011173287.1 type IV wide pilus major component PilA4 Machinery gene
  V4943_RS04395 (V4943_04395) - 835549..836841 (-) 1293 WP_143591263.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16884.66 Da        Isoelectric Point: 11.5286

>NTDB_id=934414 V4943_RS04370 WP_011173283.1 831408..831878(+) (pilA/pilA1) [Thermus thermophilus strain HB27_delta_csm3]
MTRRGLTLLELLLVLGILGVLLGLALPLLSPNRLALDQAARSLATQVTRARLEAIRRNAFVGLQVFTEGAGGYLLFVDQN
ANRRYDPGEEFGATHFGQGNWARVRLDPEKSALGNMPLLFDPRGIPAKPITATLVLTSGGATRKVVISQQGRARLE

Nucleotide


Download         Length: 471 bp        

>NTDB_id=934414 V4943_RS04370 WP_011173283.1 831408..831878(+) (pilA/pilA1) [Thermus thermophilus strain HB27_delta_csm3]
ATGACTCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTTTTGGGCATCCTGGGGGTCCTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCACCCAGGTGACCCGGGCAAGGCTCGAGG
CCATCCGCCGGAACGCCTTCGTGGGCCTTCAGGTGTTCACCGAAGGAGCGGGGGGTTACCTGCTCTTCGTGGACCAAAAC
GCCAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGACCCACTTCGGCCAAGGGAACTGGGCCCGGGTGCGCCTGGA
CCCGGAGAAGAGCGCCCTCGGCAACATGCCCCTTCTCTTTGACCCCCGGGGCATCCCGGCCAAGCCCATCACCGCCACGC
TCGTCCTCACCTCAGGGGGCGCCACCCGCAAGGTGGTCATCTCCCAGCAGGGCCGGGCCCGCCTGGAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type II transport protein GspH (GspH)

(39-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

100

100

1