Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VQP54_RS06535 Genome accession   NZ_CP144682
Coordinates   1345840..1347222 (-) Length   460 a.a.
NCBI ID   WP_338486796.1    Uniprot ID   -
Organism   Ruoffia tabacinasalis strain jzb001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1340840..1352222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQP54_RS06520 (VQP54_06520) - 1341080..1342240 (-) 1161 WP_338486789.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  VQP54_RS06525 (VQP54_06525) gltX 1343157..1344635 (-) 1479 WP_338486791.1 glutamate--tRNA ligase -
  VQP54_RS06530 (VQP54_06530) - 1344669..1345787 (-) 1119 WP_218930336.1 PIN domain-containing protein -
  VQP54_RS06535 (VQP54_06535) radA 1345840..1347222 (-) 1383 WP_338486796.1 DNA repair protein RadA Machinery gene
  VQP54_RS06540 (VQP54_06540) - 1347240..1347800 (-) 561 WP_138404240.1 dUTP diphosphatase -
  VQP54_RS06545 (VQP54_06545) - 1348097..1349581 (-) 1485 WP_338486798.1 alpha-amylase -
  VQP54_RS06550 (VQP54_06550) - 1349718..1350197 (+) 480 WP_338486800.1 nucleoside deaminase -
  VQP54_RS06555 (VQP54_06555) - 1350262..1350696 (+) 435 WP_338486802.1 DUF296 domain-containing protein -
  VQP54_RS06560 (VQP54_06560) - 1350801..1351334 (-) 534 WP_338486804.1 YetF domain-containing protein -
  VQP54_RS06565 (VQP54_06565) - 1351443..1351892 (-) 450 Protein_1270 DUF937 domain-containing protein -
  VQP54_RS06570 (VQP54_06570) - 1351908..1352078 (-) 171 WP_338486805.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51122.98 Da        Isoelectric Point: 5.6070

>NTDB_id=934390 VQP54_RS06535 WP_338486796.1 1345840..1347222(-) (radA) [Ruoffia tabacinasalis strain jzb001]
MAKKKLMYECLACGYESPKWLGKCPSCGAWNQMEEKPADIVAADGKDQINVLTSKQRQEGNALKLDEIEYTQEDRMSTDF
QEFDRVLGGGVVEGSLVLIGGDPGIGKSTLLLQVAMQLAQKQKILYVTGEESFSQIKIRAERLELNNDNFYLLADTNLAL
IAREIQRLEPDMVVIDSIQTMSIPDHTGVAGSVSQVREATAILMRIAKSNRIAIFIVGHVTKEGNIAGPRMLEHMVDTVL
YFEGEKHNRFRVLRAVKNRFGSTNELGVFEMLDVGLKEVGNPSQLFLEERIPGATGSTVVAALEGTRTILAEVQSLMTPT
VYGTAKRTASGIDYQRISLLLAVMEKHCGLLVQNQDAFFKITGGIKLDEPAIDLAIAMSIASSYWNKPTQVDDCYIGEIG
LTGEIRRVSQIEERLKETAKLGFKRVFIPKNNYQDLKDVFDIEIVPVKTIQEAVRKVFPR

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=934390 VQP54_RS06535 WP_338486796.1 1345840..1347222(-) (radA) [Ruoffia tabacinasalis strain jzb001]
GTGGCTAAAAAGAAATTAATGTATGAATGTTTAGCTTGTGGTTATGAATCTCCTAAATGGCTAGGTAAGTGTCCAAGTTG
TGGTGCATGGAATCAGATGGAAGAAAAACCAGCTGATATTGTTGCTGCAGACGGTAAAGACCAAATAAATGTCCTAACAT
CGAAGCAACGCCAAGAAGGTAACGCTTTAAAATTAGACGAAATTGAATATACTCAAGAAGATCGAATGAGTACTGACTTT
CAAGAGTTTGACCGAGTCCTCGGTGGCGGGGTTGTTGAGGGTTCACTCGTATTAATTGGTGGAGATCCCGGAATTGGAAA
ATCAACACTTCTTTTACAAGTTGCGATGCAACTCGCTCAAAAGCAAAAGATTTTGTATGTGACAGGTGAGGAAAGTTTTT
CTCAAATTAAGATACGTGCAGAACGTTTAGAATTAAATAACGATAATTTCTACTTGTTAGCTGATACGAATTTAGCTTTA
ATTGCCCGTGAAATCCAACGTTTAGAACCAGACATGGTCGTGATTGATTCTATTCAGACAATGTCGATACCTGATCATAC
AGGAGTTGCTGGCTCTGTGTCACAAGTCCGCGAAGCGACCGCAATTCTAATGCGTATTGCTAAGTCAAACCGAATTGCAA
TTTTTATTGTCGGTCATGTAACTAAAGAAGGCAATATTGCTGGACCTCGTATGTTAGAACATATGGTAGATACGGTCTTA
TACTTTGAAGGTGAGAAGCATAACCGCTTTAGAGTCCTTAGAGCAGTAAAAAACCGTTTCGGCTCAACTAATGAACTCGG
TGTGTTTGAAATGTTAGACGTTGGATTGAAAGAAGTCGGTAATCCATCACAACTCTTCTTGGAAGAACGAATTCCTGGAG
CAACAGGATCAACGGTAGTTGCGGCCTTAGAGGGGACGCGGACCATCTTAGCTGAAGTTCAATCGCTCATGACACCGACT
GTCTATGGGACTGCTAAGCGAACAGCGAGTGGGATTGATTATCAACGTATATCACTTTTACTTGCAGTGATGGAGAAGCA
TTGTGGTCTCTTAGTTCAAAACCAAGACGCCTTCTTTAAGATTACAGGTGGTATAAAATTAGACGAGCCCGCGATTGATT
TAGCGATTGCGATGAGTATCGCTTCAAGCTATTGGAATAAGCCCACACAAGTGGATGATTGTTATATTGGTGAGATTGGC
TTGACTGGAGAAATCCGCCGCGTGAGTCAAATCGAAGAACGTCTAAAAGAGACGGCTAAATTAGGTTTTAAACGGGTCTT
TATTCCAAAGAATAATTACCAAGATTTAAAAGATGTTTTTGACATTGAAATTGTTCCTGTCAAAACCATTCAAGAAGCTG
TAAGAAAAGTATTTCCACGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(368-432)

AAA domain (AAA_25)

(72-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

59.17

99.565

0.589
  radA Streptococcus mitis NCTC 12261

59.17

99.565

0.589
  radA Streptococcus pneumoniae Rx1

59.17

99.565

0.589
  radA Streptococcus pneumoniae D39

59.17

99.565

0.589
  radA Streptococcus pneumoniae R6

59.17

99.565

0.589
  radA Streptococcus pneumoniae TIGR4

59.17

99.565

0.589
  radA Bacillus subtilis subsp. subtilis str. 168

57.237

99.13

0.567