Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   V4Q78_RS01450 Genome accession   NZ_CP144563
Coordinates   310796..311437 (+) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain AB5075 isolate grey variant     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305796..316437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q78_RS01430 (V4Q78_01430) - 305844..306176 (+) 333 WP_000169598.1 hypothetical protein -
  V4Q78_RS01435 (V4Q78_01435) - 306179..307003 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  V4Q78_RS01440 (V4Q78_01440) ponA 307021..309576 (-) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  V4Q78_RS01445 (V4Q78_01445) pilM 309738..310796 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  V4Q78_RS01450 (V4Q78_01450) pilN 310796..311437 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  V4Q78_RS01455 (V4Q78_01455) pilO 311434..312174 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  V4Q78_RS01460 (V4Q78_01460) pilP 312185..312712 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  V4Q78_RS01465 (V4Q78_01465) pilQ 312775..314940 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  V4Q78_RS01470 (V4Q78_01470) aroK 314952..315521 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=934284 V4Q78_RS01450 WP_000201229.1 310796..311437(+) (pilN) [Acinetobacter baumannii strain AB5075 isolate grey variant]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=934284 V4Q78_RS01450 WP_000201229.1 310796..311437(+) (pilN) [Acinetobacter baumannii strain AB5075 isolate grey variant]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714