Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V4S37_RS10345 Genome accession   NZ_CP144502
Coordinates   2035929..2036645 (+) Length   238 a.a.
NCBI ID   WP_016251015.1    Uniprot ID   S1QZC3
Organism   Enterococcus cecorum strain 45     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030929..2041645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S37_RS10330 (V4S37_10330) - 2031144..2031980 (-) 837 WP_016251018.1 PRD domain-containing protein -
  V4S37_RS10335 (V4S37_10335) - 2032195..2033379 (-) 1185 WP_016251017.1 nucleoside transporter C-terminal domain-containing protein -
  V4S37_RS10340 (V4S37_10340) treP 2033591..2035594 (-) 2004 WP_016251016.1 PTS system trehalose-specific EIIBC component -
  V4S37_RS10345 (V4S37_10345) treR 2035929..2036645 (+) 717 WP_016251015.1 trehalose operon repressor Regulator
  V4S37_RS10350 (V4S37_10350) - 2036693..2036920 (-) 228 WP_016251014.1 hypothetical protein -
  V4S37_RS10355 (V4S37_10355) - 2037006..2038406 (-) 1401 WP_060470699.1 glycoside hydrolase family 1 protein -
  V4S37_RS10360 (V4S37_10360) - 2038555..2039217 (+) 663 Protein_1994 PTS transporter subunit EIIC -
  V4S37_RS10365 (V4S37_10365) - 2039269..2039991 (+) 723 WP_347900302.1 GntR family transcriptional regulator -
  V4S37_RS10370 (V4S37_10370) - 2040106..2041467 (-) 1362 WP_171301747.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27948.89 Da        Isoelectric Point: 6.9278

>NTDB_id=934169 V4S37_RS10345 WP_016251015.1 2035929..2036645(+) (treR) [Enterococcus cecorum strain 45]
MKIYELIYQQLESEILLGNYPPETFLPSESQLAKHFEASRDTIRKALQQLTNHGYIKKVQGKGSLVLRREQLRFPVSGLT
SYKELQNAYGYDSSTQVESLTKLIVKKELAEKTGFEENHEVWSVLRSRKIDGQKVILDWDLIALEFVKELDTEIAKDSLY
AYFEKQLGLEISFAEKEITVDPVKTLDKLYLDLNEQDTHIVSVTSRVFLKNMRQFQYTESHHRLDKFKFHDFARRHQL

Nucleotide


Download         Length: 717 bp        

>NTDB_id=934169 V4S37_RS10345 WP_016251015.1 2035929..2036645(+) (treR) [Enterococcus cecorum strain 45]
ATGAAAATATATGAATTAATCTATCAACAATTAGAAAGTGAAATCTTATTGGGAAATTATCCCCCAGAAACCTTTTTACC
AAGTGAAAGCCAATTAGCTAAGCACTTTGAAGCCTCACGCGATACGATTCGCAAAGCCTTGCAGCAATTGACCAACCATG
GCTATATCAAAAAAGTTCAAGGTAAAGGTTCATTAGTCTTAAGAAGAGAACAGTTACGTTTCCCTGTTTCTGGTCTAACT
AGTTATAAAGAGTTACAAAATGCCTATGGTTATGATAGCAGCACCCAAGTCGAAAGTTTAACCAAGCTAATTGTCAAAAA
AGAACTAGCTGAAAAAACTGGCTTTGAAGAAAATCATGAAGTTTGGTCCGTCCTAAGAAGCCGTAAAATTGATGGGCAAA
AGGTAATTTTAGATTGGGATTTGATTGCGCTAGAATTTGTGAAAGAGCTCGATACTGAAATTGCCAAAGATTCCTTATAT
GCATATTTTGAAAAACAGCTCGGACTAGAAATCTCTTTTGCTGAAAAAGAAATTACGGTTGATCCTGTTAAAACCTTGGA
TAAATTATATTTGGATTTAAATGAGCAAGATACCCACATTGTTTCGGTGACAAGTCGCGTCTTCTTAAAAAATATGCGGC
AATTTCAATATACAGAAAGCCATCATCGCCTCGACAAGTTTAAATTTCATGATTTTGCTCGTCGCCACCAATTGTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S1QZC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

48.523

99.58

0.483