Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V4S27_RS10840 Genome accession   NZ_CP144495
Coordinates   2145380..2147197 (-) Length   605 a.a.
NCBI ID   WP_347915089.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 70     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2140380..2152197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S27_RS10820 (V4S27_10820) - 2141681..2142658 (+) 978 WP_347915085.1 alpha/beta hydrolase -
  V4S27_RS10825 (V4S27_10825) - 2143139..2144026 (+) 888 WP_347915086.1 ABC transporter ATP-binding protein -
  V4S27_RS10830 (V4S27_10830) - 2144023..2144757 (+) 735 WP_347915087.1 ABC transporter permease -
  V4S27_RS10835 (V4S27_10835) - 2144750..2145310 (+) 561 WP_347915088.1 hypothetical protein -
  V4S27_RS10840 (V4S27_10840) pepF 2145380..2147197 (-) 1818 WP_347915089.1 oligoendopeptidase F Regulator
  V4S27_RS10845 (V4S27_10845) - 2147239..2148237 (-) 999 WP_347915091.1 competence protein CoiA family protein -
  V4S27_RS10850 (V4S27_10850) ispE 2148313..2149164 (-) 852 WP_016250660.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  V4S27_RS10855 (V4S27_10855) - 2149227..2149397 (-) 171 WP_154656935.1 hypothetical protein -
  V4S27_RS10860 (V4S27_10860) - 2149438..2151009 (-) 1572 WP_347915092.1 ABC transporter ATP-binding protein -
  V4S27_RS10865 (V4S27_10865) - 2151099..2151971 (-) 873 WP_047338810.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69348.79 Da        Isoelectric Point: 4.7027

>NTDB_id=934092 V4S27_RS10840 WP_347915089.1 2145380..2147197(-) (pepF) [Enterococcus cecorum strain 70]
MSETKQLPLRSEVPEELTWDLSVIFKDDAAFEEAFTALNDRLAEVSNYQGTLANGAKAFLAALEYCLDVMRQLETLYVYS
HLRNDQDTTNATDQALHSRANALVAKASEAIAWFEPEVLALDDAKIWGYFDELPELGLYRHYIQQIVDNREHILPAEQEA
LLAGAGEIFGAAADTFSVLNNADLEFPVIEDEKGEKVQLSHGVYGQLLESTDRRVRKDAFEGLYKVYQQFARTFASTLST
NVKRHNYAAKVRHFESARQAALSGNHIPESVYETLVSVVNENLPLLHRYMALRKRLLNLDEMHMYDVYTPLLGESSLKYT
YEEATKEAFKALEPMGEEYLAVVKEAFENRWIDVVENKGKRSGAYSSGCYDTNPYILLNWHDTLDQLFTLVHEMGHSVHS
YFTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLETQKDPKVRAFVLNHYLDGFKATVFRQTQFAEFEHFIHVEDAKGT
PLTAEFLNDYYGNLNKRYYGDAVTSDPQISYEWSRIPHFYYNYYVYQYATGFSAASALAKKILSKEENALENYLNYLKAG
NSDYPIEVMKKAGVDMTKADYLKEAMQVFAQRLDELEALVNELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=934092 V4S27_RS10840 WP_347915089.1 2145380..2147197(-) (pepF) [Enterococcus cecorum strain 70]
ATGTCAGAAACAAAACAATTACCATTACGCTCTGAAGTACCAGAAGAATTAACTTGGGACTTATCTGTCATTTTTAAAGA
CGATGCAGCCTTTGAAGAAGCTTTTACTGCCTTAAATGATCGTTTGGCAGAAGTAAGTAACTATCAAGGAACACTAGCCA
ATGGTGCCAAAGCCTTTTTAGCTGCTTTAGAATATTGCTTAGATGTGATGCGTCAATTAGAAACGCTTTATGTTTATTCT
CATTTACGCAATGACCAAGACACTACCAATGCGACAGATCAAGCGCTACATTCACGTGCTAATGCCTTAGTCGCTAAAGC
TAGTGAAGCCATTGCCTGGTTTGAACCTGAAGTATTAGCTTTAGATGATGCAAAAATTTGGGGTTATTTCGATGAATTAC
CAGAATTAGGCTTATACCGCCATTATATCCAACAAATCGTGGACAATCGCGAACACATTTTACCAGCTGAACAAGAAGCA
TTATTAGCTGGTGCCGGTGAAATTTTTGGCGCTGCAGCAGATACTTTCTCTGTTTTAAACAATGCCGACTTAGAATTTCC
AGTGATTGAAGATGAAAAAGGTGAAAAAGTCCAATTATCTCATGGGGTATATGGTCAATTATTAGAAAGCACTGACCGTC
GTGTACGTAAAGATGCCTTTGAAGGTTTGTATAAAGTGTATCAACAATTTGCACGTACTTTTGCTTCAACTTTAAGTACC
AATGTGAAACGCCATAACTATGCTGCAAAAGTTCGTCATTTTGAATCTGCCCGTCAAGCAGCATTAAGTGGCAACCATAT
TCCAGAAAGTGTGTACGAAACTTTAGTCAGCGTGGTTAATGAAAACTTACCATTGTTACACCGCTACATGGCTTTGCGCA
AACGTTTATTAAACTTAGATGAAATGCACATGTACGATGTCTACACACCACTTTTAGGTGAAAGTTCATTGAAATATACT
TATGAAGAAGCCACTAAAGAAGCCTTCAAAGCATTAGAACCAATGGGTGAGGAATACTTAGCTGTGGTGAAAGAAGCTTT
TGAAAACCGCTGGATTGATGTGGTGGAAAATAAAGGTAAACGCAGTGGGGCTTATTCATCAGGTTGCTATGATACCAACC
CATACATCTTGTTAAATTGGCATGACACCCTAGACCAATTATTTACTTTGGTTCATGAAATGGGTCACTCTGTTCATAGT
TATTTCACACGCAAAAACCAACCATATGTATACGGGGATTACTCGATTTTCTTAGCTGAAATTGCGTCAACAACGAATGA
AAATATCTTAACTGAATATTTATTAGAAACACAAAAAGATCCTAAAGTGCGTGCCTTTGTCTTAAATCATTATCTAGATG
GCTTTAAGGCAACTGTTTTCCGTCAAACCCAATTTGCGGAATTTGAACACTTTATTCATGTGGAAGATGCAAAAGGTACC
CCATTAACTGCTGAATTCTTAAATGATTATTATGGCAACTTGAACAAACGCTACTATGGCGATGCAGTAACAAGTGATCC
ACAAATCAGCTATGAATGGTCACGTATCCCTCACTTCTACTACAATTATTATGTTTATCAATATGCAACTGGCTTTAGTG
CTGCCTCTGCCTTAGCGAAGAAGATTCTAAGCAAGGAAGAAAATGCCTTAGAAAACTACTTGAACTATCTAAAAGCTGGT
AATAGTGACTACCCAATCGAAGTCATGAAAAAAGCCGGCGTAGATATGACTAAAGCAGATTATCTAAAAGAAGCCATGCA
AGTCTTCGCACAACGCCTAGACGAACTAGAAGCATTGGTGAACGAATTAGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

57.53

97.686

0.562