Detailed information NTG0093409

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8607_RS05925
• Genome accession: NZ_AP028360
• Coordinates: 1131682..1132641 (+)
• Length: 319 a.a.
• NCBI ID: WP_002876195.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10579
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1126682..1137641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8607_RS05900 (B10579_11550)	-	1127031..1128053 (-)	1023	WP_002876190.1	hypothetical protein	-
R8607_RS05905 (B10579_11560)	-	1128124..1128897 (+)	774	WP_002866160.1	glycosyltransferase family 25 protein	-
R8607_RS05910 (B10579_11570)	wlaTB	1128890..1129846 (+)	957	WP_002860237.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
R8607_RS05915 (B10579_11580)	wlaTC	1129843..1130802 (+)	960	WP_002876191.1	class E lipooligosaccharide biosynthesis protein WlaTC	-
R8607_RS05920 (B10579_11590)	-	1130805..1131623 (-)	819	WP_002876193.1	glycosyltransferase family 2 protein	-
R8607_RS05925 (B10579_11600)	waaF	1131682..1132641 (+)	960	WP_002876195.1	lipopolysaccharide heptosyltransferase II	Regulator
R8607_RS05930 (B10579_11610)	gmhA	1132622..1133182 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
R8607_RS05935 (B10579_11620)	rfaE1	1133179..1134564 (-)	1386	WP_002910336.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8607_RS05940 (B10579_11630)	rfaD	1134557..1135510 (-)	954	WP_002860242.1	ADP-glyceromanno-heptose 6-epimerase	-
R8607_RS05945 (B10579_11640)	gmhB	1135511..1136072 (-)	562	Protein_1147	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8607_RS05950 (B10579_11650)	-	1136153..1136455 (+)	303	WP_002852762.1	c-type cytochrome	-
R8607_RS05955 (B10579_11660)	ccoS	1136478..1136684 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36607.08 Da
• Isoelectric Point: 10.2870

>NTDB_id=93409 R8607_RS05925 WP_002876195.1 1131682..1132641(+) (waaF) [Campylobacter jejuni strain BCH-10579]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=93409 R8607_RS05925 WP_002876195.1 1131682..1132641(+) (waaF) [Campylobacter jejuni strain BCH-10579]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.025	99.687	0.937