Detailed information NTG0934076

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB9M03_RS10105
• Genome accession: NZ_CP168035
• Coordinates: 2015387..2016379 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC23HZZ201
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2010387..2021379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB9M03_RS10085 (AB9M03_10090)	otnK	2011162..2012424 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
AB9M03_RS10090 (AB9M03_10095)	ygbL	2012421..2013059 (+)	639	WP_001278994.1	aldolase	-
AB9M03_RS10095 (AB9M03_10100)	ygbM	2013064..2013840 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AB9M03_RS10100 (AB9M03_10105)	ygbN	2013929..2015293 (+)	1365	WP_000104441.1	GntP family transporter	-
AB9M03_RS10105 (AB9M03_10110)	rpoS	2015387..2016379 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB9M03_RS10110 (AB9M03_10115)	nlpD	2016442..2017536 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AB9M03_RS10115 (AB9M03_10120)	pcm	2017721..2018347 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB9M03_RS10120 (AB9M03_10125)	surE	2018341..2019102 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB9M03_RS10125 (AB9M03_10130)	truD	2019083..2020132 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AB9M03_RS10130 (AB9M03_10135)	ispF	2020129..2020608 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB9M03_RS10135 (AB9M03_10140)	ispD	2020608..2021318 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=934076 AB9M03_RS10105 WP_000081550.1 2015387..2016379(-) (rpoS) [Escherichia coli strain EC23HZZ201]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=934076 AB9M03_RS10105 WP_000081550.1 2015387..2016379(-) (rpoS) [Escherichia coli strain EC23HZZ201]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715