Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V4S36_RS12870 Genome accession   NZ_CP144490
Coordinates   2501532..2503349 (-) Length   605 a.a.
NCBI ID   WP_347908832.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 127     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496532..2508349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S36_RS12840 (V4S36_12840) - 2497636..2497854 (+) 219 WP_016250668.1 hypothetical protein -
  V4S36_RS12845 (V4S36_12845) - 2498164..2498475 (+) 312 WP_347943795.1 helix-turn-helix transcriptional regulator -
  V4S36_RS12850 (V4S36_12850) - 2498447..2499016 (+) 570 WP_347943796.1 MutR family transcriptional regulator -
  V4S36_RS12855 (V4S36_12855) - 2499159..2500046 (+) 888 WP_047343186.1 ABC transporter ATP-binding protein -
  V4S36_RS12860 (V4S36_12860) - 2500043..2500777 (+) 735 WP_347908836.1 ABC transporter permease -
  V4S36_RS12865 (V4S36_12865) - 2500770..2501330 (+) 561 WP_347908834.1 hypothetical protein -
  V4S36_RS12870 (V4S36_12870) pepF 2501532..2503349 (-) 1818 WP_347908832.1 oligoendopeptidase F Regulator
  V4S36_RS12875 (V4S36_12875) - 2503391..2504389 (-) 999 WP_347943797.1 competence protein CoiA family protein -
  V4S36_RS12880 (V4S36_12880) ispE 2504466..2505317 (-) 852 WP_047334739.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  V4S36_RS12885 (V4S36_12885) - 2505380..2505547 (-) 168 WP_016250659.1 hypothetical protein -
  V4S36_RS12890 (V4S36_12890) - 2505560..2505808 (-) 249 WP_047334738.1 AbrB family transcriptional regulator -
  V4S36_RS12895 (V4S36_12895) - 2505979..2506410 (-) 432 WP_047334737.1 hypothetical protein -
  V4S36_RS12900 (V4S36_12900) - 2506414..2506944 (-) 531 WP_047334736.1 DUF6773 family protein -
  V4S36_RS12905 (V4S36_12905) - 2507064..2507525 (-) 462 WP_047334735.1 hypothetical protein -
  V4S36_RS12910 (V4S36_12910) - 2507526..2507717 (-) 192 WP_047334734.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69316.79 Da        Isoelectric Point: 4.7048

>NTDB_id=934052 V4S36_RS12870 WP_347908832.1 2501532..2503349(-) (pepF) [Enterococcus cecorum strain 127]
MSETKQLPLRSEVPEELTWDLSVIFKDDAAFEEAFAALNDRLAEVGNYQGTLANGAKAFLAALEYCLDVMRQLETLYVYS
HLRNDQDTTNATDQALHSRANALVAKASEAIAWFEPEVLALEDAKIWGYFDELPELALYRHYIQQIVDNREHILPAEQEA
LLAGAGEIFGAAADTFSVLNNADLEFPVIEDEKGEKVQLSHGVYGQLLESTDRRVRKDAFEGLYKVYQQFARTFASTLST
NVKRHNYAAKVRHFESARQAALSGNHIPESVYETLVSVVNENLPLLHRYMALRKRLLNLDEMHMYDVYTPLLGESSLKYT
YEEATKEAFKALEPMGEEYLAVVKEAFENRWIDVVENKGKRSGAYSSGCYDTNPYILLNWHDTLDQLFTLVHEMGHSVHS
YFTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLETQKDPKVRAFVLNHYLDGFKATVFRQTQFAEFEHFIHVEDAKGT
PLTAEFLNDYYGNLNKRYYGDAVTSDPQISYEWSRIPHFYYNYYVYQYATGFSAASALAKKILSKEENALENYLNYLKAG
NSDYPIEVMKKAGVDMTKADYLKEAMQVFAQRLDELEALVNELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=934052 V4S36_RS12870 WP_347908832.1 2501532..2503349(-) (pepF) [Enterococcus cecorum strain 127]
ATGTCAGAAACAAAACAATTACCATTACGTTCTGAAGTACCAGAAGAATTAACTTGGGACTTATCTGTCATTTTTAAAGA
CGATGCAGCCTTTGAAGAAGCATTTGCCGCATTGAATGATCGTTTGGCAGAAGTAGGCAACTATCAAGGAACACTAGCTA
ATGGTGCCAAAGCCTTTTTAGCAGCTTTAGAATATTGCTTAGATGTGATGCGCCAATTAGAAACGCTTTATGTTTACTCT
CATTTACGCAATGACCAAGACACTACCAATGCGACAGATCAAGCGCTACATTCACGTGCTAATGCCTTAGTCGCTAAAGC
TAGTGAAGCCATTGCCTGGTTTGAACCTGAAGTATTAGCATTAGAGGATGCAAAAATTTGGGGTTATTTCGATGAATTAC
CAGAATTAGCTTTATACCGCCATTATATCCAACAAATCGTGGACAATCGCGAACACATTTTACCAGCTGAACAAGAAGCA
TTATTAGCTGGTGCCGGTGAGATTTTTGGCGCTGCAGCAGATACTTTCTCTGTTTTAAACAATGCCGACCTAGAATTTCC
GGTGATTGAAGATGAAAAAGGTGAAAAAGTCCAATTATCTCATGGTGTATATGGTCAATTATTAGAAAGCACTGACCGTC
GTGTACGTAAAGATGCCTTTGAAGGTTTGTATAAAGTGTACCAACAATTTGCGCGTACTTTCGCTTCAACTTTAAGTACC
AATGTGAAACGTCATAACTATGCTGCCAAAGTTCGTCATTTTGAATCTGCCCGTCAAGCAGCATTAAGTGGCAACCATAT
TCCAGAAAGTGTGTACGAAACTTTAGTCAGCGTGGTTAATGAAAACTTACCATTGTTACACCGCTACATGGCTTTGCGCA
AACGTTTATTAAACTTAGATGAAATGCACATGTACGATGTCTACACACCACTTTTAGGTGAAAGTTCATTGAAATATACT
TATGAAGAAGCCACTAAAGAAGCCTTCAAAGCATTAGAACCAATGGGCGAGGAATACTTAGCTGTGGTGAAAGAAGCTTT
TGAAAACCGCTGGATTGATGTGGTGGAAAATAAAGGTAAACGCAGTGGGGCTTATTCATCAGGTTGCTATGATACCAATC
CATACATCTTGTTAAACTGGCATGATACCCTAGACCAATTATTTACTCTGGTTCATGAAATGGGTCACTCTGTTCATAGT
TACTTCACACGCAAAAATCAACCATATGTATACGGTGATTACTCGATTTTCTTAGCTGAAATTGCGTCTACAACGAATGA
AAATATCTTAACTGAATATTTATTAGAAACACAAAAAGATCCTAAAGTGCGTGCCTTTGTCTTAAATCATTATCTAGATG
GCTTTAAGGCAACTGTTTTCCGTCAAACCCAATTTGCGGAATTTGAACACTTTATTCATGTGGAAGATGCCAAAGGGACA
CCATTAACTGCTGAATTCTTAAATGATTATTATGGCAACTTGAACAAACGCTACTATGGCGATGCAGTGACAAGCGATCC
ACAAATCAGCTATGAATGGTCACGTATCCCTCACTTCTACTACAATTATTATGTATATCAATATGCAACTGGCTTTAGTG
CTGCCTCTGCCTTAGCGAAGAAGATTCTAAGCAAGGAAGAAAATGCCTTAGAAAACTACTTGAACTATCTAAAAGCTGGT
AATAGTGACTACCCAATCGAAGTGATGAAAAAAGCCGGCGTAGATATGACTAAAGCAGATTATCTAAAAGAAGCCATGCA
AGTCTTCGCACAACGCCTAGACGAACTAGAAGCATTGGTGAACGAATTAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

57.022

97.686

0.557