Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8607_RS03025 Genome accession   NZ_AP028360
Coordinates   580969..581352 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10579     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575969..586352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8607_RS03005 (B10579_05950) - 576048..577982 (-) 1935 WP_317654542.1 RNB domain-containing ribonuclease -
  R8607_RS03010 (B10579_05960) ilvC 578101..579123 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  R8607_RS03015 (B10579_05970) - 579127..580209 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  R8607_RS03020 (B10579_05980) dprA 580199..580972 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  R8607_RS03025 (B10579_05990) dprB 580969..581352 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  R8607_RS03030 (B10579_06000) - 581381..582220 (+) 840 WP_079460160.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8607_RS03035 (B10579_06010) msrA 582397..582894 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8607_RS03040 (B10579_06020) ppa 582936..583454 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8607_RS03045 (B10579_06030) adk 583464..584042 (-) 579 WP_002859580.1 adenylate kinase -
  R8607_RS03050 (B10579_06040) aspS 584039..585790 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=93397 R8607_RS03025 WP_002918422.1 580969..581352(+) (dprB) [Campylobacter jejuni strain BCH-10579]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=93397 R8607_RS03025 WP_002918422.1 580969..581352(+) (dprB) [Campylobacter jejuni strain BCH-10579]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment