Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VZ068_RS16630 Genome accession   NZ_CP144460
Coordinates   3969883..3970941 (-) Length   352 a.a.
NCBI ID   WP_039423791.1    Uniprot ID   -
Organism   Xanthomonas sp. 10-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3964883..3975941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZ068_RS16610 (VZ068_16615) - 3966021..3967901 (-) 1881 WP_349655913.1 type IV pilus secretin PilQ family protein -
  VZ068_RS16615 (VZ068_16620) - 3967921..3968454 (-) 534 WP_316688200.1 pilus assembly protein PilP -
  VZ068_RS16620 (VZ068_16625) - 3968451..3969116 (-) 666 WP_349655914.1 type 4a pilus biogenesis protein PilO -
  VZ068_RS16625 (VZ068_16630) - 3969113..3969883 (-) 771 WP_349655915.1 PilN domain-containing protein -
  VZ068_RS16630 (VZ068_16635) comM 3969883..3970941 (-) 1059 WP_039423791.1 pilus assembly protein PilM Machinery gene
  VZ068_RS16635 (VZ068_16640) - 3971061..3973586 (+) 2526 WP_259156127.1 penicillin-binding protein 1A -
  VZ068_RS16640 (VZ068_16645) - 3973800..3974447 (+) 648 WP_259162682.1 hypothetical protein -
  VZ068_RS16645 (VZ068_16650) - 3974608..3975897 (-) 1290 WP_039409911.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.21 Da        Isoelectric Point: 4.3924

>NTDB_id=933964 VZ068_RS16630 WP_039423791.1 3969883..3970941(-) (comM) [Xanthomonas sp. 10-10]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=933964 VZ068_RS16630 WP_039423791.1 3969883..3970941(-) (comM) [Xanthomonas sp. 10-10]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGATATCAGTTCTACTGCCGTGAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTTCGCGTGGAGCATTACGCGGTGGAGCCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TTGAAGTCGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCTGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGACCTGGACGACAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCTTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGTTGCTGGCTGCCTCGCGCTCGGAGAATGTCGAGCTGCGCCAATCGGCGCTGGAACTGGGT
GGTCTGACTGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTTGCCCTGGTCGCCAGCGAACTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTCGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGTAGCC
TGTACAGCCGCGAACAAGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTCATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGTTTGCCGGAAAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCAACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCTGCGCTGTCGCGGCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTGGCCAACCCGCTTGCG
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCACGCGCTGGCGCTGGATGCGCCCGCCCTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472