Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACDZ08_RS08900 Genome accession   NZ_CP168014
Coordinates   1841240..1841980 (-) Length   246 a.a.
NCBI ID   WP_000216870.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230627_barcode16     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836240..1846980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ08_RS08875 (ACDZ08_08875) hemH 1837116..1838039 (-) 924 WP_000162885.1 ferrochelatase -
  ACDZ08_RS08880 (ACDZ08_08880) hemE 1838097..1839134 (-) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  ACDZ08_RS08885 (ACDZ08_08885) - 1839124..1839234 (-) 111 WP_001790154.1 hypothetical protein -
  ACDZ08_RS08890 (ACDZ08_08890) traP 1839397..1839900 (+) 504 WP_000737976.1 signal transduction protein TRAP -
  ACDZ08_RS08895 (ACDZ08_08895) ecsB 1840024..1841247 (-) 1224 WP_001245768.1 ABC transporter permease EcsB -
  ACDZ08_RS08900 (ACDZ08_08900) pptA 1841240..1841980 (-) 741 WP_000216870.1 ABC transporter ATP-binding protein EcsA Regulator
  ACDZ08_RS08905 (ACDZ08_08905) - 1842114..1842536 (+) 423 WP_000004981.1 HIT family protein -
  ACDZ08_RS08910 (ACDZ08_08910) - 1842678..1843043 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  ACDZ08_RS08915 (ACDZ08_08915) - 1843776..1844333 (+) 558 WP_000477963.1 DUF3267 domain-containing protein -
  ACDZ08_RS08920 (ACDZ08_08920) - 1844538..1845500 (+) 963 WP_053507451.1 foldase protein PrsA -
  ACDZ08_RS08925 (ACDZ08_08925) yhaM 1845621..1846562 (-) 942 WP_001244180.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27658.96 Da        Isoelectric Point: 4.6672

>NTDB_id=933942 ACDZ08_RS08900 WP_000216870.1 1841240..1841980(-) (pptA) [Staphylococcus aureus strain sa230627_barcode16]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKAMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=933942 ACDZ08_RS08900 WP_000216870.1 1841240..1841980(-) (pptA) [Staphylococcus aureus strain sa230627_barcode16]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGCCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTTGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

97.154

0.553
  pptA Streptococcus thermophilus LMD-9

55.649

97.154

0.541