Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   V4H42_RS05055 Genome accession   NZ_CP144454
Coordinates   1046623..1049016 (-) Length   797 a.a.
NCBI ID   WP_181874176.1    Uniprot ID   -
Organism   Pasteurella multocida strain PM1463     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1041623..1054016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4H42_RS05035 (V4H42_05035) kdsB 1042841..1043617 (-) 777 WP_005756949.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V4H42_RS05040 (V4H42_05040) - 1043619..1043801 (-) 183 WP_005731619.1 Trm112 family protein -
  V4H42_RS05045 (V4H42_05045) lpxK 1043813..1044790 (-) 978 WP_115173483.1 tetraacyldisaccharide 4'-kinase -
  V4H42_RS05050 (V4H42_05050) msbA 1044822..1046570 (-) 1749 WP_005716843.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  V4H42_RS05055 (V4H42_05055) rec2 1046623..1049016 (-) 2394 WP_181874176.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V4H42_RS05060 (V4H42_05060) dksA 1049313..1049750 (+) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  V4H42_RS05065 (V4H42_05065) pcnB 1049839..1051344 (+) 1506 WP_115173484.1 polynucleotide adenylyltransferase PcnB -
  V4H42_RS05070 (V4H42_05070) folK 1051356..1051853 (+) 498 WP_005716864.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  V4H42_RS05075 (V4H42_05075) - 1051840..1052922 (-) 1083 WP_005716866.1 homoserine O-acetyltransferase -
  V4H42_RS05080 (V4H42_05080) - 1053085..1053795 (+) 711 WP_005722678.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91067.46 Da        Isoelectric Point: 9.7827

>NTDB_id=933903 V4H42_RS05055 WP_181874176.1 1046623..1049016(-) (rec2) [Pasteurella multocida strain PM1463]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRLIQLLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVSAVSVLMLWYQIFPLSLLHWRGKKITESPWRNCRWFFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSFWSIANTIAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDLKKESLKCYAKVPRFFHLNQMRLLNPSLKWKTYLLAVGISLYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQNYGKTDRT
FCEAGKTWTWQHLTFKALSPTKIVKRAKNTDSCVLLISDGSHHLLLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=933903 V4H42_RS05055 WP_181874176.1 1046623..1049016(-) (rec2) [Pasteurella multocida strain PM1463]
ATGAAAAACGCTCTTTTGTCAATGTCTGTCGTGACCGTATTCAGCGCCTGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGCATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGCTCAACTACCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCAGCACAATTGTCTCCACAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACAGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGGCTGTTACTTGCGCTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACCAGCACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTGCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGCATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTAGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGAGTCCTT
GGCGCAACTGTCGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATTTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTTTTGGTCTATTGCAAATACTATTGCGAAATATGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTAAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCTGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGGCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCATCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATCTCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGTAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAGATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Competence protein (Competence)

(213-487)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.688

96.612

0.499