Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACDZ08_RS03665 Genome accession   NZ_CP168014
Coordinates   768464..769546 (+) Length   360 a.a.
NCBI ID   WP_001815315.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230627_barcode16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763464..774546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ08_RS03645 (ACDZ08_03645) gdpS 763834..764904 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  ACDZ08_RS03650 (ACDZ08_03650) - 765222..766277 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACDZ08_RS03655 (ACDZ08_03655) - 766449..767090 (-) 642 WP_000192958.1 YigZ family protein -
  ACDZ08_RS03660 (ACDZ08_03660) fakB1 767234..768100 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  ACDZ08_RS03665 (ACDZ08_03665) comFA 768464..769546 (+) 1083 WP_001815315.1 DEAD/DEAH box helicase Machinery gene
  ACDZ08_RS03670 (ACDZ08_03670) - 769539..770213 (+) 675 WP_001057965.1 ComF family protein -
  ACDZ08_RS03675 (ACDZ08_03675) hpf 770274..770846 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACDZ08_RS03680 (ACDZ08_03680) secA 771260..773791 (+) 2532 WP_000506535.1 preprotein translocase subunit SecA -
  ACDZ08_RS03685 (ACDZ08_03685) - 773833..773937 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42141.74 Da        Isoelectric Point: 9.8307

>NTDB_id=933889 ACDZ08_RS03665 WP_001815315.1 768464..769546(+) (comFA) [Staphylococcus aureus strain sa230627_barcode16]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTMTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=933889 ACDZ08_RS03665 WP_001815315.1 768464..769546(+) (comFA) [Staphylococcus aureus strain sa230627_barcode16]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTATGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364