NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	V4D31_RS07800	Genome accession	NZ_CP144374
Coordinates	1508811..1510166 (-)	Length	451 a.a.
NCBI ID	WP_353685878.1	Uniprot ID	A0AAU8H420
Organism	Thermodesulfovibrio sp. 3462-1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1503811..1515166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4D31_RS07765 (V4D31_07735)	thpR	1504732..1505292 (-)	561	WP_353685871.1	RNA 2',3'-cyclic phosphodiesterase	-
V4D31_RS07770 (V4D31_07740)	-	1505299..1505745 (-)	447	WP_353685872.1	phosphatidylglycerophosphatase A	-
V4D31_RS07775 (V4D31_07745)	-	1505984..1506502 (+)	519	WP_353685873.1	chemotaxis protein CheW	-
V4D31_RS07780 (V4D31_07750)	-	1506489..1506893 (-)	405	WP_353685874.1	hypothetical protein	-
V4D31_RS07785 (V4D31_07755)	-	1506957..1507307 (-)	351	WP_353685875.1	hypothetical protein	-
V4D31_RS07790 (V4D31_07760)	rsmA	1507435..1508208 (-)	774	WP_353685876.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
V4D31_RS07795 (V4D31_07765)	-	1508201..1508839 (-)	639	WP_353685877.1	hypothetical protein	-
V4D31_RS07800 (V4D31_07770)	radA	1508811..1510166 (-)	1356	WP_353685878.1	DNA repair protein RadA	Machinery gene
V4D31_RS07805 (V4D31_07775)	-	1510189..1511772 (-)	1584	WP_353685879.1	L-lactate permease	-
V4D31_RS07810 (V4D31_07780)	-	1511885..1512862 (+)	978	WP_353685880.1	NrpR regulatory domain-containing protein	-

Sequence

Protein

Download Length: 451 a.a. Molecular weight: 48834.35 Da Isoelectric Point: 5.6163

                                >NTDB_id=933880 V4D31_RS07800 WP_353685878.1 1508811..1510166(-) (radA) [Thermodesulfovibrio sp. 3462-1]

MKAKIKQVFQCQSCGYISPKWIGRCPDCGAWNSFVEETIEAGTERKILSETVQPVSISSIEITVSDRFLTGIAELDRVLG

GGLVKGSLILIGGDPGIGKSTLLLQASNNLSLQYGKVLYVSAEESLTQIKLRAERLGITSEGILLLSETLVEKIIECAKE

TQPATLIVDSIQTVYTEEAVSAPGSVSQIRDSAAKFMNFAKSTGIPVFLIGHVTKEGAIAGPRVLEHLVDTVLYFEGDRG

YAYRILRSVKNRFGPTNEIGVFEMTSQGLTEVENPSLIFLSEHGVSSGSAITATIEGTRAILTEIQALVSPSQFGMPRRN

FIGVDYQRVNLLIAVIEKRGKVNLASADIFVNVVGGLKITEPASDLAIISAIVSSFRDMPLPDRTVIFGEVGLSGEIRAI

SQTELRLKEASRIGMKRAIIPKSNLERLKEGYDLNIKGVTSINELIEVINS

Nucleotide

Download Length: 1356 bp

                                >NTDB_id=933880 V4D31_RS07800 WP_353685878.1 1508811..1510166(-) (radA) [Thermodesulfovibrio sp. 3462-1]

ATGAAGGCAAAGATTAAGCAAGTTTTTCAGTGCCAAAGCTGTGGATATATTTCACCAAAGTGGATTGGCCGATGCCCTGA

TTGTGGCGCATGGAACAGCTTTGTTGAGGAAACTATAGAAGCAGGAACTGAAAGAAAAATTTTATCAGAAACTGTTCAGC

CTGTTTCCATTAGTTCAATTGAAATTACAGTATCGGACAGATTTTTAACTGGAATTGCAGAACTTGACAGAGTTCTTGGT

GGCGGATTAGTTAAAGGCTCTCTTATTCTTATTGGAGGAGACCCTGGTATTGGGAAATCAACACTGCTACTGCAGGCATC

CAATAACCTTTCATTGCAGTATGGTAAAGTTCTTTATGTTTCAGCAGAGGAATCTCTTACACAGATAAAACTTAGAGCAG

AAAGACTCGGAATTACTTCAGAAGGAATTTTGCTTCTTAGTGAAACCCTTGTTGAGAAAATTATTGAATGTGCAAAAGAA

ACTCAACCAGCTACACTAATTGTTGATTCAATTCAGACAGTTTACACTGAAGAAGCAGTTTCAGCACCTGGTTCTGTAAG

TCAGATTAGAGATTCCGCAGCAAAATTTATGAATTTTGCAAAATCCACAGGGATTCCTGTCTTTCTAATCGGTCATGTCA

CAAAAGAAGGAGCAATAGCAGGTCCAAGAGTGCTTGAGCATCTTGTGGATACAGTTCTTTATTTTGAAGGAGACAGGGGA

TATGCCTATAGAATCCTGAGAAGTGTAAAAAACCGTTTTGGTCCAACCAATGAAATAGGTGTTTTTGAGATGACTTCACA

GGGACTTACAGAGGTTGAAAATCCTTCTTTAATTTTTCTTTCTGAACATGGAGTGTCAAGTGGTTCAGCCATTACAGCAA

CAATTGAAGGAACAAGAGCAATTCTCACTGAAATACAAGCACTGGTTTCACCTTCACAGTTTGGAATGCCAAGAAGAAAT

TTTATTGGAGTTGATTATCAGAGAGTAAATCTTTTAATTGCTGTTATTGAAAAACGCGGGAAAGTAAATCTTGCCAGTGC

AGATATATTTGTAAATGTTGTTGGAGGATTAAAAATTACAGAGCCTGCTTCGGATTTAGCAATAATTTCTGCCATTGTTT

CCTCTTTTAGAGATATGCCTTTGCCTGATAGAACTGTTATTTTTGGTGAAGTTGGATTAAGTGGCGAGATTCGTGCAATA

TCTCAAACTGAGTTAAGATTAAAAGAAGCCTCCAGAATAGGTATGAAAAGAGCAATTATCCCTAAAAGCAATCTTGAAAG

GCTTAAAGAAGGTTATGATCTAAACATAAAAGGAGTGACATCAATTAATGAACTTATTGAGGTTATTAACAGTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

AAA domain (AAA_25)

(63-217)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	55.654	100	0.557
radA	Streptococcus mitis SK321	49.667	100	0.497
radA	Streptococcus mitis NCTC 12261	49.667	100	0.497
radA	Streptococcus pneumoniae Rx1	49.667	100	0.497
radA	Streptococcus pneumoniae D39	49.667	100	0.497
radA	Streptococcus pneumoniae R6	49.667	100	0.497
radA	Streptococcus pneumoniae TIGR4	49.667	100	0.497

Detailed information NTG0933880