Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V4D30_RS05985 Genome accession   NZ_CP144373
Coordinates   1157772..1158677 (-) Length   301 a.a.
NCBI ID   WP_353683413.1    Uniprot ID   A0AAU8GWT4
Organism   Thermodesulfovibrio sp. 3907-1M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1152772..1163677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4D30_RS05955 (V4D30_05900) aprB 1154037..1154465 (-) 429 WP_353683408.1 adenylyl-sulfate reductase subunit beta -
  V4D30_RS05960 (V4D30_05905) - 1154492..1154893 (-) 402 WP_353683409.1 hypothetical protein -
  V4D30_RS05965 (V4D30_05910) sat 1154909..1156294 (-) 1386 WP_353683410.1 sulfate adenylyltransferase -
  V4D30_RS05970 (V4D30_05915) - 1156307..1156957 (-) 651 WP_353683411.1 adenylate kinase -
  V4D30_RS05975 (V4D30_05920) - 1157059..1157658 (-) 600 WP_353683412.1 XTP/dITP diphosphatase -
  V4D30_RS05985 (V4D30_05930) pilA 1157772..1158677 (-) 906 WP_353683413.1 signal recognition particle-docking protein FtsY Machinery gene
  V4D30_RS05990 (V4D30_05935) - 1158677..1160422 (-) 1746 WP_353683414.1 hypothetical protein -
  V4D30_RS05995 (V4D30_05940) - 1160563..1160970 (+) 408 WP_353683415.1 RDD family protein -
  V4D30_RS06000 (V4D30_05945) - 1161019..1162056 (+) 1038 WP_353683416.1 rod shape-determining protein -
  V4D30_RS06005 (V4D30_05950) mreC 1162053..1162817 (+) 765 WP_353683417.1 rod shape-determining protein MreC -
  V4D30_RS06010 (V4D30_05955) - 1162814..1163299 (+) 486 WP_353683418.1 hypothetical protein -

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 32875.37 Da        Isoelectric Point: 8.7498

>NTDB_id=933859 V4D30_RS05985 WP_353683413.1 1157772..1158677(-) (pilA) [Thermodesulfovibrio sp. 3907-1M]
MGLFDKLKEKLSKTKQHIVEKIEAVVPVGRKIDETTIEEIEEILISSDFGIHATEQITSILRKRVKEGALKDYSDFKSIL
KDELYKILENATNLNLSSKPAVILVVGVNGVGKTTTIGKLGYKFISEGKSVVFAAADTFRAAAIEQLEIWAKRVGADIIK
HKSGADPAAVVFDAVEHARAKKKDIVIIDTAGRLHTKQPLMEELKKINRVIKKSIPEAPHETLLILDATTGQNAIRQACL
FNEALGLTGVVVTKLDGTAKGGVIFGIKKEIGIPVKLIGIGEGIDDLKEFNPKEFVEALFD

Nucleotide


Download         Length: 906 bp        

>NTDB_id=933859 V4D30_RS05985 WP_353683413.1 1157772..1158677(-) (pilA) [Thermodesulfovibrio sp. 3907-1M]
ATGGGTTTATTTGACAAGCTCAAGGAAAAGTTAAGCAAGACAAAACAACATATTGTTGAAAAAATTGAAGCTGTTGTTCC
AGTAGGCAGAAAAATTGATGAAACTACAATAGAAGAAATAGAGGAGATTTTAATATCCTCTGATTTTGGTATACATGCAA
CAGAACAGATTACATCTATTCTAAGAAAAAGAGTAAAAGAAGGCGCATTAAAGGACTATAGTGATTTTAAATCTATACTC
AAAGATGAGCTTTATAAAATTCTTGAAAATGCAACAAATTTAAATTTATCCTCAAAACCTGCAGTAATTCTGGTGGTTGG
AGTAAATGGAGTTGGAAAAACTACAACCATTGGAAAACTGGGTTATAAATTTATAAGTGAAGGTAAATCTGTTGTTTTTG
CTGCTGCTGATACCTTTAGAGCTGCAGCTATAGAACAACTTGAAATATGGGCAAAAAGGGTAGGAGCTGATATTATCAAA
CATAAGAGTGGAGCTGATCCAGCTGCTGTTGTTTTTGATGCAGTGGAGCATGCTAGAGCAAAAAAAAAGGATATAGTAAT
TATAGATACAGCAGGCAGACTTCACACAAAGCAACCATTAATGGAAGAGTTAAAAAAAATCAACAGAGTTATAAAAAAAT
CAATTCCAGAAGCTCCCCATGAGACTTTGCTGATTTTAGATGCTACAACAGGGCAGAATGCAATAAGACAGGCTTGTCTG
TTTAATGAAGCCTTAGGATTAACAGGTGTGGTTGTTACAAAGCTTGATGGAACAGCAAAGGGTGGAGTTATTTTCGGAAT
AAAAAAAGAGATAGGCATTCCTGTTAAATTAATCGGCATTGGCGAAGGAATTGATGATTTAAAGGAGTTCAATCCTAAAG
AATTTGTTGAAGCTTTGTTTGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(20-84)

SRP54-type protein, GTPase domain (SRP54)

(100-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.026

100

0.485