Detailed information NTG0933831

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: V3C82_RS02670
• Genome accession: NZ_CP144368
• Coordinates: 594096..595478 (+)
• Length: 460 a.a.
• NCBI ID: WP_010253610.1
• Uniprot ID: -
• Organism: Pantoea agglomerans strain Y03
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 589096..600478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3C82_RS02645 (V3C82_02645)	-	590161..590571 (+)	411	WP_022625367.1	DNA polymerase III subunit psi	-
V3C82_RS02650 (V3C82_02650)	rimI	590543..590983 (+)	441	WP_010253603.1	ribosomal protein S18-alanine N-acetyltransferase	-
V3C82_RS02655 (V3C82_02655)	yjjG	591002..591682 (+)	681	WP_010671712.1	pyrimidine 5'-nucleotidase	-
V3C82_RS02660 (V3C82_02660)	-	592347..592997 (-)	651	WP_010253606.1	YtjB family periplasmic protein	-
V3C82_RS02665 (V3C82_02665)	serB	593105..594082 (+)	978	WP_010253608.1	phosphoserine phosphatase	-
V3C82_RS02670 (V3C82_02670)	radA	594096..595478 (+)	1383	WP_010253610.1	DNA repair protein RadA	Machinery gene
V3C82_RS02675 (V3C82_02675)	nadR	595554..596795 (+)	1242	WP_010253612.1	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	-
V3C82_RS02680 (V3C82_02680)	-	596841..597842 (-)	1002	WP_331842989.1	zinc-binding alcohol dehydrogenase family protein	-
V3C82_RS02685 (V3C82_02685)	-	598047..598943 (+)	897	WP_010253616.1	LysR family transcriptional regulator	-
V3C82_RS02690 (V3C82_02690)	-	598924..599526 (-)	603	WP_033787411.1	putative adenosine monophosphate-protein transferase Fic	-
V3C82_RS02695 (V3C82_02695)	-	599539..599703 (-)	165	WP_109652447.1	YhfG family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 49321.96 Da
• Isoelectric Point: 7.4220

>NTDB_id=933831 V3C82_RS02670 WP_010253610.1 594096..595478(+) (radA) [Pantoea agglomerans strain Y03]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide

• Length: 1383 bp

>NTDB_id=933831 V3C82_RS02670 WP_010253610.1 594096..595478(+) (radA) [Pantoea agglomerans strain Y03]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCCGGCAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCTACACTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTAATGCACATGGCGGAGAT
CCAGTCATCGCCCGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTTGGTCACGTTACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTGAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCGGTAGGTCTGGAGCAGAACCGCCTGGCGATTCTGCTGGCAGTATTGCACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTACCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAACGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (347-433)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• AAA domain (AAA_25) (87-225)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.373	100	0.485
radA	Streptococcus mitis NCTC 12261	44.82	96.522	0.433
radA	Streptococcus pneumoniae Rx1	45.244	93.696	0.424
radA	Streptococcus pneumoniae D39	45.244	93.696	0.424
radA	Streptococcus pneumoniae R6	45.244	93.696	0.424
radA	Streptococcus pneumoniae TIGR4	45.244	93.696	0.424
radA	Streptococcus mitis SK321	45.244	93.696	0.424