Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACDZ05_RS03575 Genome accession   NZ_CP168013
Coordinates   756841..757923 (+) Length   360 a.a.
NCBI ID   WP_000370983.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230711_barcode73     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 751841..762923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ05_RS03555 (ACDZ05_03555) gdpS 752219..753289 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  ACDZ05_RS03560 (ACDZ05_03560) - 753607..754662 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  ACDZ05_RS03565 (ACDZ05_03565) - 754826..755467 (-) 642 WP_000192949.1 YigZ family protein -
  ACDZ05_RS03570 (ACDZ05_03570) fakB1 755611..756477 (+) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  ACDZ05_RS03575 (ACDZ05_03575) comFA 756841..757923 (+) 1083 WP_000370983.1 DEAD/DEAH box helicase Machinery gene
  ACDZ05_RS03580 (ACDZ05_03580) - 757916..758590 (+) 675 WP_001057962.1 ComF family protein -
  ACDZ05_RS03585 (ACDZ05_03585) hpf 758651..759223 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACDZ05_RS03590 (ACDZ05_03590) secA 759637..762168 (+) 2532 WP_000506529.1 preprotein translocase subunit SecA -
  ACDZ05_RS03595 (ACDZ05_03595) - 762210..762329 (+) 120 WP_031774844.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42038.52 Da        Isoelectric Point: 9.6802

>NTDB_id=933803 ACDZ05_RS03575 WP_000370983.1 756841..757923(+) (comFA) [Staphylococcus aureus strain sa230711_barcode73]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=933803 ACDZ05_RS03575 WP_000370983.1 756841..757923(+) (comFA) [Staphylococcus aureus strain sa230711_barcode73]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGATTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369