Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   V3829_RS15960 Genome accession   NZ_CP144358
Coordinates   3219664..3220455 (-) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus velezensis strain DJ4     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3214664..3225455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS15920 - 3214933..3215268 (-) 336 WP_003155488.1 SdpI family protein -
  V3829_RS15925 - 3215354..3215881 (-) 528 WP_057080392.1 SH3 domain-containing protein -
  V3829_RS15930 - 3216013..3216282 (-) 270 WP_003155492.1 YfhJ family protein -
  V3829_RS15935 - 3216406..3216558 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  V3829_RS15940 - 3216703..3217614 (+) 912 WP_003155497.1 trypsin-like serine peptidase -
  V3829_RS15945 - 3217577..3217966 (+) 390 WP_024085032.1 DUF2606 family protein -
  V3829_RS15950 - 3218006..3219199 (-) 1194 WP_025650229.1 MFS transporter -
  V3829_RS15955 - 3219346..3219657 (-) 312 WP_003155501.1 YfhH family protein -
  V3829_RS15960 recX 3219664..3220455 (-) 792 WP_003155502.1 recombination regulator RecX Regulator
  V3829_RS15965 - 3220547..3221446 (+) 900 WP_088037533.1 TIGR01777 family oxidoreductase -
  V3829_RS15970 - 3221504..3221614 (+) 111 WP_003155504.1 YfhE family protein -
  V3829_RS15975 - 3221685..3221876 (+) 192 WP_003155508.1 YfhD family protein -
  V3829_RS15980 - 3221915..3222499 (-) 585 WP_003155509.1 nitroreductase -
  V3829_RS15985 - 3222576..3223460 (-) 885 WP_003155510.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=933754 V3829_RS15960 WP_003155502.1 3219664..3220455(-) (recX) [Bacillus velezensis strain DJ4]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=933754 V3829_RS15960 WP_003155502.1 3219664..3220455(-) (recX) [Bacillus velezensis strain DJ4]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGTGATGACGTGAAAAAAGCCTTTAACCGCGCCGTTGAATTTTTATCATATCGGATGCGGTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791