Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V3829_RS13000 Genome accession   NZ_CP144358
Coordinates   2678869..2679153 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJ4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2673869..2684153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS12980 ade 2673974..2675708 (-) 1735 Protein_2522 adenine deaminase -
  V3829_RS12985 ktrC 2675857..2676522 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  V3829_RS12990 - 2676563..2677390 (-) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  V3829_RS12995 - 2677392..2678696 (-) 1305 WP_014304932.1 ATP-binding protein -
  V3829_RS13000 abrB 2678869..2679153 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V3829_RS13005 mreBH 2679422..2680429 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  V3829_RS13010 - 2680501..2680635 (+) 135 WP_003154559.1 protein YkpC -
  V3829_RS13015 - 2680736..2681968 (+) 1233 WP_003154560.1 aminopeptidase -
  V3829_RS13020 - 2681998..2682906 (-) 909 WP_003154561.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=933737 V3829_RS13000 WP_003154557.1 2678869..2679153(-) (abrB) [Bacillus velezensis strain DJ4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=933737 V3829_RS13000 WP_003154557.1 2678869..2679153(-) (abrB) [Bacillus velezensis strain DJ4]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543