Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V3829_RS09255 Genome accession   NZ_CP144358
Coordinates   1813378..1813668 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJ4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808378..1818668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS09215 darA 1808395..1808724 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  V3829_RS09220 - 1808737..1809177 (+) 441 WP_004264730.1 YaaR family protein -
  V3829_RS09225 holB 1809189..1810178 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  V3829_RS09230 ricT 1810181..1811008 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  V3829_RS09235 yabA 1811023..1811382 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  V3829_RS09240 - 1811442..1812185 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V3829_RS09245 - 1812172..1812472 (+) 301 Protein_1803 GIY-YIG nuclease family protein -
  V3829_RS09250 rsmI 1812447..1813328 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V3829_RS09255 abrB 1813378..1813668 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  V3829_RS09260 metG 1814151..1816142 (+) 1992 WP_015388789.1 methionine--tRNA ligase -
  V3829_RS09265 - 1816218..1816985 (+) 768 WP_004264700.1 TatD family hydrolase -
  V3829_RS09270 - 1817120..1818445 (+) 1326 WP_094247906.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=933730 V3829_RS09255 WP_169510469.1 1813378..1813668(-) (abrB) [Bacillus velezensis strain DJ4]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=933730 V3829_RS09255 WP_169510469.1 1813378..1813668(-) (abrB) [Bacillus velezensis strain DJ4]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979