Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   V3829_RS09025 Genome accession   NZ_CP144358
Coordinates   1770854..1771966 (+) Length   370 a.a.
NCBI ID   WP_024084783.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJ4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765854..1776966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS09000 rnpA 1766566..1766916 (-) 351 WP_004392944.1 ribonuclease P protein component -
  V3829_RS09005 rpmH 1767071..1767205 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  V3829_RS09010 dnaA 1767827..1769167 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  V3829_RS09015 dnaN 1769352..1770488 (+) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  V3829_RS09020 rlbA 1770623..1770838 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  V3829_RS09025 recF 1770854..1771966 (+) 1113 WP_024084783.1 DNA replication/repair protein RecF Machinery gene
  V3829_RS09030 remB 1771984..1772229 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  V3829_RS09035 gyrB 1772289..1774205 (+) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  V3829_RS09040 gyrA 1774421..1776880 (+) 2460 WP_004392898.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42428.35 Da        Isoelectric Point: 7.0882

>NTDB_id=933728 V3829_RS09025 WP_024084783.1 1770854..1771966(+) (recF) [Bacillus velezensis strain DJ4]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=933728 V3829_RS09025 WP_024084783.1 1770854..1771966(+) (recF) [Bacillus velezensis strain DJ4]
TTGTATATCCAAAATTTAGAACTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943