Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   V3829_RS04380 Genome accession   NZ_CP144358
Coordinates   863787..863927 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain DJ4     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 858787..868927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS04355 - 859084..859467 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  V3829_RS04360 comA 859489..860133 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  V3829_RS04365 comP 860214..862517 (-) 2304 WP_003152050.1 histidine kinase Regulator
  V3829_RS04375 comQ 862670..863602 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  V3829_RS04380 degQ 863787..863927 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  V3829_RS04385 - 864393..864734 (+) 342 WP_046560014.1 hypothetical protein -
  V3829_RS04390 - 864741..865962 (-) 1222 Protein_851 EAL and HDOD domain-containing protein -
  V3829_RS04395 - 866092..867558 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  V3829_RS04400 - 867576..868127 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  V3829_RS04405 - 868224..868622 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=933714 V3829_RS04380 WP_003152043.1 863787..863927(-) (degQ) [Bacillus velezensis strain DJ4]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=933714 V3829_RS04380 WP_003152043.1 863787..863927(-) (degQ) [Bacillus velezensis strain DJ4]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891