Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V3829_RS00115 Genome accession   NZ_CP144358
Coordinates   16272..16880 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJ4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 11272..21880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS00075 - 12359..12865 (-) 507 WP_003153536.1 PTS glucose transporter subunit IIA -
  V3829_RS00080 - 13004..13417 (+) 414 WP_003153535.1 hypothetical protein -
  V3829_RS00085 - 13447..13848 (-) 402 WP_048367441.1 YppG family protein -
  V3829_RS00090 - 14034..14216 (+) 183 WP_003153532.1 YppF family protein -
  V3829_RS00095 - 14255..14623 (-) 369 WP_003153529.1 YppE family protein -
  V3829_RS00100 - 14669..14914 (-) 246 WP_003153527.1 DUF5446 family protein -
  V3829_RS00105 sspM 15120..15224 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  V3829_RS00110 - 15268..16230 (-) 963 WP_046559836.1 DUF2515 domain-containing protein -
  V3829_RS00115 recU 16272..16880 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  V3829_RS00120 - 16919..19702 (+) 2784 WP_046559837.1 PBP1A family penicillin-binding protein -
  V3829_RS00125 - 19779..20270 (-) 492 WP_046559838.1 YpoC family protein -
  V3829_RS00130 nth 20267..20926 (-) 660 WP_015388079.1 endonuclease III -
  V3829_RS00135 dnaD 20945..21643 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=933689 V3829_RS00115 WP_003153521.1 16272..16880(+) (recU) [Bacillus velezensis strain DJ4]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=933689 V3829_RS00115 WP_003153521.1 16272..16880(+) (recU) [Bacillus velezensis strain DJ4]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896