Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   ENLAB_RS15065 Genome accession   NZ_AP025635
Coordinates   3227173..3228990 (+) Length   605 a.a.
NCBI ID   WP_244351864.1    Uniprot ID   -
Organism   Enterococcus innesii strain DB-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 3222173..3233990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENLAB_RS15045 (ENLAB_29800) - 3222374..3224110 (+) 1737 WP_244351859.1 ABC transporter ATP-binding protein -
  ENLAB_RS15050 (ENLAB_29810) spxA 3224812..3225210 (+) 399 WP_003127030.1 transcriptional regulator SpxA -
  ENLAB_RS15055 (ENLAB_29820) - 3225363..3226013 (+) 651 WP_077452520.1 adaptor protein MecA -
  ENLAB_RS15060 - 3226114..3227112 (+) 999 WP_244351862.1 competence protein CoiA -
  ENLAB_RS15065 (ENLAB_29830) pepF 3227173..3228990 (+) 1818 WP_244351864.1 oligoendopeptidase F Regulator
  ENLAB_RS15070 (ENLAB_29840) - 3229122..3229778 (-) 657 WP_223080146.1 DsbA family protein -
  ENLAB_RS15075 (ENLAB_29850) - 3229887..3230462 (-) 576 WP_081118447.1 CYTH domain-containing protein -
  ENLAB_RS15080 (ENLAB_29860) - 3230658..3231326 (+) 669 WP_077452515.1 GTP pyrophosphokinase family protein -
  ENLAB_RS15085 (ENLAB_29870) - 3231332..3232129 (+) 798 WP_170920136.1 NAD kinase -
  ENLAB_RS15090 (ENLAB_29880) - 3232134..3233033 (+) 900 WP_081118448.1 RluA family pseudouridine synthase -

Sequence


Protein


Download         Length: 605 a.a.        Molecular weight: 69029.57 Da        Isoelectric Point: 4.6952

>NTDB_id=93364 ENLAB_RS15065 WP_244351864.1 3227173..3228990(+) (pepF) [Enterococcus innesii strain DB-1]
MSETKQLPARESIPVEKTWDLTKIYADDAAFDIEFQEIQAQVKEASRYQGTLADGPQAFLAALEFVLDLSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASSLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHVLPADQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKYDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDSRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEALVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=93364 ENLAB_RS15065 WP_244351864.1 3227173..3228990(+) (pepF) [Enterococcus innesii strain DB-1]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATCCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGCTTTTGACATAGAATTTCAAGAAATTCAAGCACAGGTCAAAGAAGCCAGCCGTTACCAAGGCACTTTAGCAG
ACGGTCCGCAAGCCTTTTTAGCCGCTTTAGAATTTGTCTTAGATCTTTCTCGCCGCTTGGAGAAACTGTATGTCTACAGC
CATCTAAAAAACGACCAAGACACCGCTAATACGACTTATCAAGGCTTATATGCGAAAGCCAGCAGTTTAGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCCGAGTTATTGACGATGTCCGATGAAACGATTTGGGGCTATTTCGATCAAGAAC
CTAAGTTAGCAGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGGCCCCATGTTTTGCCTGCCGATCAAGAAGCG
TTATTGGCCGGTGCTGGCGAAATTTTTGGTGCCCCTGGCAATATTTTCTCTGTTTTAAACAATGCTGACTTGGATTTTCC
AGTCGTTGAAGACGAAAATGGGGAAAAAGTGCAGCTGTCACATGGTGTCTATGGTGAGTTGATGGAAAGTACAGATCGCT
CTGTCCGAGAAGCGGCCTTTAAAGGTCTCTATGGCGTCTATGAGCAATTCCGTAATACCTTTGCCCAAACCTTAAGTACG
AATATCAAAGCCCACAACTTTAAAGCCAAAGCTCGTAAATACGATTCCGCACGCCAAGCCGCTTTGAGTGCCAATCATAT
TCCTGAAAGTGTCTATGATACGTTAGTGGACGTCGTTAATCAGCATTTGCCGTTACTACACCGTTATATGGCATTAAGAA
AACGCCTGTTGGCTGTCGACACACTTCATATGTATGATGTCTACACGCCGATTTTAGGGGAAGCACCGATTCGCTACACC
TATGAAGAAGCAGTCGAAAAAGCGAAAGAAGCGCTAAAACCATTAGGGGAAGAGTATCTCGCTGTAGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGTGCCTATTCGTCAGGTGCTTATGACACGCTGC
CTTATATCTTAATGAACTGGAATGATCGATTGGATCAACTCTTCACCCTTGTTCATGAGATGGGGCACAGTGTGCATAGT
TATTTCACAAGGAATAACCAGCCTTATGCCTATGGCGATTATTCGATTTTCTTAGCAGAAATCGCTTCGACGACGAACGA
AAATATATTAACGGAATACATGCTTCAGACTGAGACTGATTCACGGGTCAAAGCCTATGTCTTGAATCATTTTCTTGATG
GCTTCAAAGGCACGATATTCCGTCAAACGCAATTTGCCGAGTTCGAGCATTTCATGCACGTAGAAGATGCGAAAGGAACA
CCGTTGACCAGTGAATTCTTAAGCGAGAATTATGCCGAGTTAAATGCGAAATACTACGGACCATCAGTTGAAAAAGATCC
TGAGATTCGTCTCGAATGGTCACGAATCCCTCATTTCTATTACAATTACTATGTCTACCAATATTCAACTGGTTTTTCCG
CAGCTTCTGCTTTGGCGAAGAAAATCTTAGCTGGCGAACCGGATGCCTTAACCAACTATTTGAACTATTTGAAAGCCGGA
CGTAGTGATTATCCAATCGAAGTCATGAAAAAAGCAGGCGTCGATATGACGAAAGCAGATTATATTGAAGATGCGATGAA
AGTATTTGAGCAACGTTTGAATGAATTGGAAGCACTCGTTAAAGAAATCGAAGCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.492

98.017

0.554


Multiple sequence alignment