Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8564_RS06115 Genome accession   NZ_AP028359
Coordinates   1157616..1158164 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10570     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1152616..1163164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8564_RS06080 (B10570_12140) - 1152807..1153232 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  R8564_RS06085 - 1153296..1153915 (+) 620 Protein_1188 NAD(P)H-dependent oxidoreductase -
  R8564_RS06090 (B10570_12170) - 1153915..1154520 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  R8564_RS06095 (B10570_12180) pgsA 1154645..1155181 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8564_RS06100 (B10570_12190) rseP 1155178..1156284 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  R8564_RS06105 (B10570_12200) - 1156277..1157143 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  R8564_RS06110 (B10570_12210) rpsF 1157230..1157607 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8564_RS06115 (B10570_12220) ssb 1157616..1158164 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  R8564_RS06120 (B10570_12230) rpsR 1158175..1158435 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8564_RS06125 (B10570_12240) lon 1158495..1160870 (-) 2376 WP_002901106.1 endopeptidase La -
  R8564_RS06130 (B10570_12250) - 1160887..1161534 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8564_RS06135 (B10570_12260) fliW 1161695..1162084 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8564_RS06140 (B10570_12270) proC 1162084..1162815 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R8564_RS06145 (B10570_12280) ctsT 1162812..1163114 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=93357 R8564_RS06115 WP_002854048.1 1157616..1158164(+) (ssb) [Campylobacter jejuni strain BCH-10570]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=93357 R8564_RS06115 WP_002854048.1 1157616..1158164(+) (ssb) [Campylobacter jejuni strain BCH-10570]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGTGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment