Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ENLAB_RS09315 Genome accession   NZ_AP025635
Coordinates   1990739..1992109 (+) Length   456 a.a.
NCBI ID   WP_005226394.1    Uniprot ID   A0A242CQN0
Organism   Enterococcus innesii strain DB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985739..1997109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENLAB_RS09285 (ENLAB_18460) - 1986206..1987024 (+) 819 WP_081117597.1 ZIP family metal transporter -
  ENLAB_RS09290 (ENLAB_18470) - 1987080..1987283 (-) 204 WP_008376766.1 hypothetical protein -
  ENLAB_RS09295 (ENLAB_18480) - 1987434..1987835 (+) 402 WP_244350796.1 DUF4809 family protein -
  ENLAB_RS09300 (ENLAB_18490) - 1987939..1989183 (-) 1245 WP_244350798.1 glutamate-5-semialdehyde dehydrogenase -
  ENLAB_RS09305 (ENLAB_18500) proB 1989180..1989995 (-) 816 WP_081117600.1 glutamate 5-kinase -
  ENLAB_RS09310 (ENLAB_18520) - 1990185..1990694 (+) 510 WP_081117601.1 dUTP diphosphatase -
  ENLAB_RS09315 (ENLAB_18530) radA 1990739..1992109 (+) 1371 WP_005226394.1 DNA repair protein RadA Machinery gene
  ENLAB_RS09320 (ENLAB_18540) - 1992282..1993421 (+) 1140 WP_005232908.1 PIN/TRAM domain-containing protein -
  ENLAB_RS09325 (ENLAB_18550) gltX 1993591..1995048 (+) 1458 WP_195265652.1 glutamate--tRNA ligase -
  ENLAB_RS09330 (ENLAB_18560) epsC 1995309..1995845 (+) 537 WP_081117733.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49604.28 Da        Isoelectric Point: 8.3034

>NTDB_id=93353 ENLAB_RS09315 WP_005226394.1 1990739..1992109(+) (radA) [Enterococcus innesii strain DB-1]
MAKKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVVPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=93353 ENLAB_RS09315 WP_005226394.1 1990739..1992109(+) (radA) [Enterococcus innesii strain DB-1]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAACTGCGGGTATAGTTCCCCTAAGTATTTAGGAAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTAGAAGAAGTGATCCAAGAAACTGCTGATCGTCGTGTACGAACAACATTGACCGGTC
AAAAGATGCAGCCGACGAAAATTGCCGATGTCGTACCGAAAAAAGAACCGCGGGTCCAAACGAAACTCGCTGAATTGAAT
CGCGTCTTAGGCGGCGGCGTGGTCCCAGGTTCCTTGATTTTGATCGGTGGGGATCCCGGGATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCCCAGCAATTAGCAGCGATCGGCGGAACGGTCTTGTATGTGTCAGGAGAAGAAAGTGCCGAGCAGATCA
AAATGAGGGCGCAGCGCTTAGGCGCCATCGACACGGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGTCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGTGTGGC
AGGCAGTGTCAGCCAAGTGCGAGAAACGACCGCAGAATTGCTGAAAATCGCTAAAACCAATGGCATCGCCATCTTTATCG
TTGGCCACGTGACGAAGGAAGGCTCGATCGCAGGACCGCGGATGCTGGAGCACATGGTGGATACCGTCTTGTATTTCGAA
GGTGAAAAGCACCACAGCTTTCGGATTTTGCGGGCCGTCAAAAACCGCTTTGGATCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGCGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACTGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAGATCCAAGCTTTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGCGTCTCGCTGATCATGGCGGTTTTAGAAAAACGGGCAGGCTT
GCTGCTGCAAAATCAAGATGCCTACTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCCGCGATCGATCTAGCGATCG
CTGTTAGTATCGCGTCTAGCTATAAAGAAAAAGGCACCAGCCCGACGGAGTGTTTTATCGGTGAAATTGGCTTGACAGGT
GAGATTCGCCGAGTCAATGCGATCGAGCAACGGGTCAAAGAGGTGCAAAAACTGGGTTTTACGAAAGTTTATTTGCCGAA
AAACAATCTGACTGGCTGGCAGCCGCCTAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTACGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242CQN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Streptococcus pneumoniae Rx1

74.505

99.781

0.743
  radA Streptococcus pneumoniae D39

74.505

99.781

0.743
  radA Streptococcus pneumoniae R6

74.505

99.781

0.743
  radA Streptococcus pneumoniae TIGR4

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664

Multiple sequence alignment