Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   V3Z63_RS28740 Genome accession   NZ_CP144289
Coordinates   6005214..6005771 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6000214..6010771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3Z63_RS28720 (V3Z63_28720) pilR 6001490..6002827 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  V3Z63_RS28725 (V3Z63_28725) thiO 6002873..6003967 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  V3Z63_RS28730 (V3Z63_28730) - 6004102..6004611 (+) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  V3Z63_RS28735 (V3Z63_28735) - 6004717..6005223 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  V3Z63_RS28740 (V3Z63_28740) pilV 6005214..6005771 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  V3Z63_RS28745 (V3Z63_28745) pilW 6005768..6006592 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  V3Z63_RS28750 (V3Z63_28750) pilX 6006589..6007176 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  V3Z63_RS28755 (V3Z63_28755) pilY1 6007188..6010679 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=933460 V3Z63_RS28740 WP_003119423.1 6005214..6005771(+) (pilV) [Pseudomonas aeruginosa strain CH1]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=933460 V3Z63_RS28740 WP_003119423.1 6005214..6005771(+) (pilV) [Pseudomonas aeruginosa strain CH1]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995