Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   VZG47_RS06610 Genome accession   NZ_CP144288
Coordinates   1316931..1318931 (-) Length   666 a.a.
NCBI ID   WP_338431713.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311931..1323931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG47_RS06590 (VZG47_06560) - 1312740..1313972 (+) 1233 WP_338431707.1 NAD(P)/FAD-dependent oxidoreductase -
  VZG47_RS06595 (VZG47_06565) - 1313952..1314509 (-) 558 WP_338431708.1 hypothetical protein -
  VZG47_RS06600 (VZG47_06570) - 1314514..1315746 (-) 1233 WP_338431709.1 type II secretion system F family protein -
  VZG47_RS06605 (VZG47_06575) pilT 1315771..1316859 (-) 1089 WP_338431711.1 type IV pilus twitching motility protein PilT Machinery gene
  VZG47_RS06610 (VZG47_06580) pilB/pilB1 1316931..1318931 (-) 2001 WP_338431713.1 GspE/PulE family protein Machinery gene
  VZG47_RS06615 (VZG47_06585) grpE 1319217..1319840 (+) 624 WP_338431715.1 nucleotide exchange factor GrpE -
  VZG47_RS06620 (VZG47_06590) dnaK 1319946..1321913 (+) 1968 WP_208676341.1 molecular chaperone DnaK -
  VZG47_RS06625 (VZG47_06595) dnaJ 1322059..1323189 (+) 1131 WP_338431717.1 molecular chaperone DnaJ -
  VZG47_RS06630 (VZG47_06600) - 1323186..1323437 (+) 252 WP_208676336.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74120.81 Da        Isoelectric Point: 5.1384

>NTDB_id=933428 VZG47_RS06610 WP_338431713.1 1316931..1318931(-) (pilB/pilB1) [Synechococcus elongatus IITB5]
MPDQPISPRHALIALNQFSSFGNKLVQAGYVDPEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQFRRQQLFELKI
LHGVESLNPEQSQYSEELIHELIADLVPIETCRRHQLLPLERHEAPPRAVIAMVDPNNLDALDELNRLLRPRGYALQRLV
ITLEDYERLVAGYLDQQVERQQAAQAQQLGDFSEELASLESLDLTEISVQEEDLAKALQEADDAPIVSLANKILLKALTE
GASDIHVEPQEEGLRVRLRRDGVLHQEFGMLPKKIQAALISRLKIMANLDIAERRVPQDGRIRRLFQGRKIDFRVNSLPS
HFGEKICMRLLDNSATQLGLDQLITDPEALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIE
YTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVE
PYLVSGSLIGVVSQRLMRRVCPDCRIPYTPSPEELGRYGLSASQELDVTFYKARTLIADDLAQARSQGQVCKTCRGTGYK
GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVTFTDSGVEAELKAKRKIGL
TCHTCGAGLQPEWLDCPYCLTPRFGN

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=933428 VZG47_RS06610 WP_338431713.1 1316931..1318931(-) (pilB/pilB1) [Synechococcus elongatus IITB5]
ATGCCAGACCAACCGATTTCCCCCCGCCACGCTCTGATTGCACTCAATCAGTTCTCATCGTTTGGTAACAAGCTGGTCCA
AGCAGGCTACGTCGACCCAGAGCAACTGCAGACAGCTTTAGTGGAAAGTCGGCGAAGTGGCCAGTCTCTGCCGCAAGTCA
TTTCAGCGCTGACTGGTCAGTCCTTACCTCCAGAGCTGATGCAGCAGTTCCGCCGGCAGCAGTTATTCGAGCTGAAGATT
CTGCACGGTGTCGAATCCCTGAATCCTGAACAAAGTCAGTATTCCGAAGAGTTAATTCATGAGCTGATTGCAGATCTCGT
CCCAATCGAAACCTGCCGTCGACACCAGCTCTTGCCCTTGGAACGACATGAGGCTCCCCCACGGGCGGTAATCGCCATGG
TGGACCCTAATAACCTCGATGCACTGGATGAACTTAATCGCCTGTTGCGCCCCAGAGGCTACGCGCTGCAGCGGTTGGTG
ATCACACTGGAAGACTACGAACGACTCGTTGCGGGCTATCTCGATCAACAAGTAGAGCGTCAGCAGGCTGCCCAAGCCCA
GCAGCTAGGAGATTTCTCTGAAGAGCTTGCCAGCCTTGAAAGCCTAGATTTAACAGAGATTTCAGTTCAAGAAGAAGATC
TTGCCAAGGCGCTACAGGAAGCAGATGATGCCCCAATCGTCAGCCTTGCGAACAAGATTCTTCTGAAAGCCTTGACTGAA
GGTGCCTCGGACATTCACGTAGAACCGCAGGAGGAAGGGCTGCGGGTGAGGCTACGCCGAGATGGGGTGCTACACCAAGA
ATTTGGAATGCTCCCGAAAAAAATTCAAGCAGCCTTGATTTCCCGCTTGAAGATCATGGCCAATCTTGATATCGCCGAGC
GCCGTGTTCCCCAAGATGGTCGGATTCGACGACTATTTCAAGGTCGCAAGATTGACTTTCGGGTTAATAGCCTCCCCAGC
CATTTCGGCGAAAAAATTTGTATGCGGTTGCTGGACAACTCAGCAACCCAGCTAGGTCTCGATCAGCTAATCACTGATCC
GGAAGCACTTGCTCTGGTCCGTGACATGGGAAGTCGTCCCTATGGCTTGATTTTGGTAACTGGCCCAACAGGATCTGGTA
AGTCCACAAGCTTGTATTCCTTGTTGGCGGAGCGCAATGATCCCGCCATTAACATCAACACCGCTGAAGATCCAATTGAA
TACACACTGCCCGGCCTGACTCAAGTGCAGGTGCTCCGAGAGAAGGGCATGAATTTTGCCTCGATCCTGAGGGCTTTTAT
GCGTCAGGATCCCGATGTGATTCTGGTGGGTGAGACACGAGATTTAGAAACGGCTCGCACAGCGATTGAAGCTGCCTTGA
CAGGGCACTTGGTCTTGACGACCCTACACGCTAACGATGCGCCCAGCGCGATCGCCCGTTTGAGTGAGATGGGGGTAGAA
CCTTATCTTGTCTCTGGTTCACTGATTGGGGTGGTGTCGCAACGCTTAATGCGCCGAGTCTGTCCTGATTGCCGCATTCC
CTATACTCCCAGCCCAGAAGAACTGGGTCGCTATGGTCTCTCAGCCAGCCAAGAACTTGATGTCACGTTTTATAAAGCCA
GAACACTAATAGCTGACGATCTCGCCCAAGCGCGATCGCAAGGGCAGGTTTGTAAGACCTGTCGGGGGACAGGCTACAAG
GGGCGGGTAGGTGTCTATGAGGTGATGCGGGTTAATGAAGTCCTCCAAGTCGCGATTAACCAGGGGCTACCCACAGAACG
CCTCAAGGAAATTGCTGTGGAGCAGGGCATGAAGACGCTGCTCTCTTACAGCTTGGAACTGGTTCGCCAGGGTTACACCA
CCTTTGAAGAAGTCGATCGCGTCACCTTTACCGATTCTGGTGTGGAAGCTGAGCTCAAAGCAAAGCGTAAAATTGGTCTC
ACTTGCCATACCTGTGGGGCAGGGCTGCAACCGGAATGGCTGGACTGCCCTTATTGCCTAACGCCCCGTTTTGGGAATTA
A

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(25-177)

Type II/IV secretion system protein (T2SSE)

(232-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.457

98.949

0.608