Detailed information NTG0933396

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: V3H91_RS19405
• Genome accession: NZ_CP144281
• Coordinates: 3797271..3798416 (+)
• Length: 381 a.a.
• NCBI ID: WP_107994197.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SEC-024A
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3792271..3803416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3H91_RS19385	-	3792745..3793461 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
V3H91_RS19390	narK	3793559..3794749 (-)	1191	WP_095315495.1	nitrate transporter NarK	-
V3H91_RS19395	argS	3794884..3796554 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
V3H91_RS19400	-	3796551..3796979 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
V3H91_RS19405	rapF	3797271..3798416 (+)	1146	WP_107994197.1	tetratricopeptide repeat protein	Regulator
V3H91_RS19410	-	3798400..3798519 (+)	120	WP_003151066.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
V3H91_RS19415	-	3798717..3798920 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
V3H91_RS19420	-	3798934..3799137 (+)	204	WP_069473623.1	hypothetical protein	-
V3H91_RS19425	-	3799545..3799826 (+)	282	WP_003151060.1	hypothetical protein	-
V3H91_RS19430	-	3799870..3800382 (+)	513	WP_003151059.1	stage II sporulation protein M	-
V3H91_RS19435	-	3800973..3801191 (-)	219	WP_003151056.1	helix-turn-helix transcriptional regulator	-
V3H91_RS19440	speB	3801361..3802233 (-)	873	WP_003151054.1	agmatinase	-
V3H91_RS19445	speE	3802293..3803123 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45313.45 Da
• Isoelectric Point: 4.9969

>NTDB_id=933396 V3H91_RS19405 WP_107994197.1 3797271..3798416(+) (rapF) [Bacillus velezensis strain SEC-024A]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIHSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide

• Length: 1146 bp

>NTDB_id=933396 V3H91_RS19405 WP_107994197.1 3797271..3798416(+) (rapF) [Bacillus velezensis strain SEC-024A]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCCATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (223-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	74.541	100	0.745
rapC	Bacillus subtilis subsp. subtilis str. 168	52.895	99.738	0.528