Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V3H91_RS13525 Genome accession   NZ_CP144281
Coordinates   2686967..2687734 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-024A     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2681967..2692734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS13505 - 2682169..2682981 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  V3H91_RS13510 ccpN 2683007..2683645 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  V3H91_RS13515 glyS 2683746..2685785 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  V3H91_RS13520 glyQ 2685778..2686665 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  V3H91_RS13525 recO 2686967..2687734 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  V3H91_RS13530 - 2687771..2687914 (-) 144 WP_007408286.1 YqzL family protein -
  V3H91_RS13535 era 2688070..2688975 (-) 906 WP_003152978.1 GTPase Era -
  V3H91_RS13540 - 2688956..2689366 (-) 411 WP_003152976.1 cytidine deaminase -
  V3H91_RS13545 - 2689490..2689864 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  V3H91_RS13550 ybeY 2689845..2690318 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  V3H91_RS13555 - 2690319..2692451 (-) 2133 WP_025852966.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=933373 V3H91_RS13525 WP_003152982.1 2686967..2687734(-) (recO) [Bacillus velezensis strain SEC-024A]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=933373 V3H91_RS13525 WP_003152982.1 2686967..2687734(-) (recO) [Bacillus velezensis strain SEC-024A]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894