Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ENLAB_RS02185 Genome accession   NZ_AP025635
Coordinates   459150..460823 (-) Length   557 a.a.
NCBI ID   WP_077454327.1    Uniprot ID   -
Organism   Enterococcus innesii strain DB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 454150..465823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENLAB_RS02160 (ENLAB_04320) pstB 454347..455153 (-) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -
  ENLAB_RS02165 (ENLAB_04330) pstA 455167..456051 (-) 885 WP_077454323.1 phosphate ABC transporter permease PstA -
  ENLAB_RS02170 (ENLAB_04340) pstC 456051..456971 (-) 921 WP_077454324.1 phosphate ABC transporter permease subunit PstC -
  ENLAB_RS02175 (ENLAB_04350) - 457069..457923 (-) 855 WP_077454325.1 phosphate ABC transporter substrate-binding protein PstS -
  ENLAB_RS02180 (ENLAB_04360) - 458322..459053 (-) 732 WP_175632080.1 alpha/beta hydrolase -
  ENLAB_RS02185 (ENLAB_04370) recN 459150..460823 (-) 1674 WP_077454327.1 DNA repair protein RecN Machinery gene
  ENLAB_RS02190 (ENLAB_04380) argR 460839..461288 (-) 450 WP_005235362.1 arginine repressor -
  ENLAB_RS02195 (ENLAB_04390) - 461386..462207 (-) 822 WP_077454328.1 TlyA family RNA methyltransferase -
  ENLAB_RS02200 (ENLAB_04400) - 462204..463100 (-) 897 WP_244352395.1 polyprenyl synthetase family protein -
  ENLAB_RS02205 (ENLAB_04410) - 463097..463318 (-) 222 WP_005235356.1 exodeoxyribonuclease VII small subunit -
  ENLAB_RS02210 (ENLAB_04420) xseA 463299..464651 (-) 1353 WP_077454330.1 exodeoxyribonuclease VII large subunit -
  ENLAB_RS02215 (ENLAB_04430) - 464652..465503 (-) 852 WP_244352397.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62629.82 Da        Isoelectric Point: 4.5399

>NTDB_id=93336 ENLAB_RS02185 WP_077454327.1 459150..460823(-) (recN) [Enterococcus innesii strain DB-1]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDSFKAELAD
YRQAYQSYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEELLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAP
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSKEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=93336 ENLAB_RS02185 WP_077454327.1 459150..460823(-) (recN) [Enterococcus innesii strain DB-1]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATTTCCAACTTACACTTATCTTTCCATGAGGGAATGACGGCACT
GACAGGTGAGACAGGTGCCGGGAAATCAATTATTATCGATGCGATGGGTTTGCTAGCAGGCGGTAGAGGTTCCAGCGACT
ATTTGCGTCAAGGAGCAGAGAAATGTCGTTTAGAAGGGATCTTCGAATGGCCGAATCAGCAGGAGTTCAAAGAGTTGACC
GCAGATTTAGGTATTGATGAAGAAGAAGTTTTGATCGTACAACGAGATATCTCTCAATCGGGGAAAACTATTTGTCGTGT
CAATGGTCGAACCGTTACCTTGTCGGTTTTGCGTCAAATCGGTTTATTCTTAGTCGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAACCGGAAAAACATTTGGCATTGATGGATGGATTTGGGGATGATAGCTTTAAAGCGGAACTTGCGGAT
TACCGTCAAGCCTATCAAAGCTATCGCTCCTTAGAAAAACATGTCCGAACCATTCAAGAAAATGAACAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCCGAATTGATGGAAAACGAAGAAGAACTGCTGATCG
ACGAACGGGAAAAACTCACGAACTATCAAAAAATCGTGGATGCCTTGGGACAAAGCTATGGTGCTCTATCAGCTGAGGAA
GTCAATAGTTTAGATGGGGTCAGTGTGGCATTGTCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGCGCGTATTACTTGTTGCAAGATGCAGCCACCGATATTTCGCGACAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTGGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATATGGGGAGTCGATT
CCTGTGATCCTAGCTTATTATGATGAGATCAGTAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGTCGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAACACGCGCAGTTTGAAGTACGGTTCGCACCT
GGCTCAAAACAATTGAGTAGCAGCGGCTTTGATACTGTGGAGTTTTATCTGACCACCAACCCCGGTGAAGGCATGAAGCC
GTTAGTGCGGGTTGCTTCTGGGGGAGAACTTTCACGGATCTTACTGGCTCTCAAATCAATTTTCTCTCGGAAACAAGGAA
TCACCAGCATTGTCTTTGATGAAGTGGATACTGGGGTTAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCAGCCAATTCGCAAGTTTTGTGTATCACGCACTTGCCGCAAGTAGCTGCTGTAGCGGATAATCAATATTTTATTGA
AAAAGCAATTCAAGAAGGACGGACGGAAACCCATGTCCGTAAACTATCTAAAGAAGAACGAGTGGCAGAGATTGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCACTGGCACACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.544

100

0.487

Multiple sequence alignment