Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V3H91_RS08565 Genome accession   NZ_CP144281
Coordinates   1655040..1655939 (+) Length   299 a.a.
NCBI ID   WP_015388238.1    Uniprot ID   A0A6A8LH26
Organism   Bacillus velezensis strain SEC-024A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1650040..1660939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS08545 - 1650731..1652434 (+) 1704 WP_107994394.1 glycosyl transferase -
  V3H91_RS08550 - 1652431..1652712 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  V3H91_RS08555 sucC 1652887..1654044 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  V3H91_RS08560 sucD 1654073..1654975 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  V3H91_RS08565 dprA 1655040..1655939 (+) 900 WP_015388238.1 DNA-processing protein DprA Machinery gene
  V3H91_RS08570 topA 1656121..1658196 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  V3H91_RS08575 trmFO 1658261..1659568 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V3H91_RS08580 xerC 1659638..1660555 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32820.92 Da        Isoelectric Point: 7.8285

>NTDB_id=933357 V3H91_RS08565 WP_015388238.1 1655040..1655939(+) (dprA) [Bacillus velezensis strain SEC-024A]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=933357 V3H91_RS08565 WP_015388238.1 1655040..1655939(+) (dprA) [Bacillus velezensis strain SEC-024A]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTTATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365