Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V3H91_RS07715 Genome accession   NZ_CP144281
Coordinates   1441148..1441432 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-024A     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1436148..1446432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS07695 - 1437395..1438303 (+) 909 WP_025851471.1 ketopantoate reductase family protein -
  V3H91_RS07700 - 1438333..1439565 (-) 1233 WP_025851469.1 aminopeptidase -
  V3H91_RS07705 - 1439666..1439800 (-) 135 WP_003154559.1 protein YkpC -
  V3H91_RS07710 mreBH 1439872..1440879 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  V3H91_RS07715 abrB 1441148..1441432 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V3H91_RS07720 - 1441605..1442909 (+) 1305 WP_014304932.1 ATP-binding protein -
  V3H91_RS07725 - 1442911..1443738 (+) 828 WP_025851463.1 gamma-glutamylcyclotransferase -
  V3H91_RS07730 ktrC 1443779..1444444 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  V3H91_RS07735 ade 1444593..1446326 (+) 1734 WP_025851460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=933356 V3H91_RS07715 WP_024085249.1 1441148..1441432(+) (abrB) [Bacillus velezensis strain SEC-024A]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=933356 V3H91_RS07715 WP_024085249.1 1441148..1441432(+) (abrB) [Bacillus velezensis strain SEC-024A]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543