Detailed information NTG0933352

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACDW38_RS06765
• Genome accession: NZ_CP167986
• Coordinates: 1449116..1450120 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 0805d0
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1444116..1455120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDW38_RS06735 (ACDW38_06735)	fghA	1444208..1445059 (+)	852	WP_023115121.1	S-formylglutathione hydrolase	-
ACDW38_RS06740 (ACDW38_06740)	ispF	1445130..1445603 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACDW38_RS06745 (ACDW38_06745)	truD	1445600..1446667 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
ACDW38_RS06750 (ACDW38_06750)	surE	1446655..1447404 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACDW38_RS06755 (ACDW38_06755)	-	1447437..1448072 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACDW38_RS06760 (ACDW38_06760)	-	1448118..1449011 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACDW38_RS06765 (ACDW38_06765)	rpoS	1449116..1450120 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACDW38_RS06770 (ACDW38_06770)	fdxA	1450547..1450870 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACDW38_RS06775 (ACDW38_06775)	mutS	1450937..1453504 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACDW38_RS06780 (ACDW38_06780)	-	1453630..1454637 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=933352 ACDW38_RS06765 WP_003113871.1 1449116..1450120(+) (rpoS) [Pseudomonas aeruginosa strain 0805d0]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=933352 ACDW38_RS06765 WP_003113871.1 1449116..1450120(+) (rpoS) [Pseudomonas aeruginosa strain 0805d0]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653