Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V3H91_RS01780 Genome accession   NZ_CP144281
Coordinates   329875..330312 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-024A     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 324875..335312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS01740 - 325454..325618 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  V3H91_RS01745 - 325732..326934 (+) 1203 WP_014304313.1 GTP-binding protein -
  V3H91_RS01750 - 326999..328135 (+) 1137 WP_107994550.1 zinc-dependent alcohol dehydrogenase -
  V3H91_RS01755 - 328150..328584 (+) 435 WP_003156592.1 RDD family protein -
  V3H91_RS01760 - 328702..328977 (+) 276 WP_369719109.1 YckD family protein -
  V3H91_RS01765 - 329081..329197 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  V3H91_RS01770 - 329196..329414 (+) 219 Protein_308 family 1 glycosylhydrolase -
  V3H91_RS01775 nin/comJ 329455..329853 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  V3H91_RS01780 nucA/comI 329875..330312 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V3H91_RS01785 hxlB 330671..331228 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  V3H91_RS01790 hxlA 331225..331860 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  V3H91_RS01795 - 332092..332454 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=933333 V3H91_RS01780 WP_003156588.1 329875..330312(-) (nucA/comI) [Bacillus velezensis strain SEC-024A]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=933333 V3H91_RS01780 WP_003156588.1 329875..330312(-) (nucA/comI) [Bacillus velezensis strain SEC-024A]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGTCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641