Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V3H91_RS00250 Genome accession   NZ_CP144281
Coordinates   45556..45846 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SEC-024A     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40556..50846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS00210 darA 40573..40902 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  V3H91_RS00215 - 40915..41355 (+) 441 WP_004264730.1 YaaR family protein -
  V3H91_RS00220 holB 41367..42356 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  V3H91_RS00225 ricT 42359..43186 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  V3H91_RS00230 yabA 43201..43560 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  V3H91_RS00235 - 43621..44364 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V3H91_RS00240 - 44351..44650 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  V3H91_RS00245 rsmI 44625..45506 (+) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V3H91_RS00250 abrB 45556..45846 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  V3H91_RS00255 metG 46329..48320 (+) 1992 WP_015388789.1 methionine--tRNA ligase -
  V3H91_RS00260 - 48396..49163 (+) 768 WP_032868379.1 TatD family hydrolase -
  V3H91_RS00265 - 49298..50623 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=933328 V3H91_RS00250 WP_169510469.1 45556..45846(-) (abrB) [Bacillus velezensis strain SEC-024A]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=933328 V3H91_RS00250 WP_169510469.1 45556..45846(-) (abrB) [Bacillus velezensis strain SEC-024A]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGTAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979