Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   V3I11_RS01320 Genome accession   NZ_CP144280
Coordinates   261889..262176 (+) Length   95 a.a.
NCBI ID   WP_042593720.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 256889..267176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS01295 (V3I11_01295) nrfE 256951..258858 (-) 1908 WP_042599597.1 heme lyase NrfEFG subunit NrfE -
  V3I11_RS01300 (V3I11_01300) suhB 258967..259770 (-) 804 WP_005664157.1 inositol-1-monophosphatase -
  V3I11_RS01305 (V3I11_01305) comN 259970..260482 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V3I11_RS01310 (V3I11_01310) comO 260482..261198 (+) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  V3I11_RS01315 (V3I11_01315) comP 261213..261896 (+) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  V3I11_RS01320 (V3I11_01320) comQ 261889..262176 (+) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  V3I11_RS01325 (V3I11_01325) recC 262222..265587 (+) 3366 WP_042599598.1 exodeoxyribonuclease V subunit gamma -
  V3I11_RS01330 (V3I11_01330) nrdR 265642..266091 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10989.76 Da        Isoelectric Point: 9.2205

>NTDB_id=933294 V3I11_RS01320 WP_042593720.1 261889..262176(+) (comQ) [Haemophilus influenzae strain P3_EMO]
MNKGISFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQVAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=933294 V3I11_RS01320 WP_042593720.1 261889..262176(+) (comQ) [Haemophilus influenzae strain P3_EMO]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGGTTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

97.895

100

0.979