Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   V3I11_RS01305 Genome accession   NZ_CP144280
Coordinates   259970..260482 (+) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254970..265482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS01285 (V3I11_01285) nrfF 255270..256424 (-) 1155 WP_042593716.1 heme lyase NrfEFG subunit NrfF -
  V3I11_RS01290 (V3I11_01290) - 256421..256951 (-) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -
  V3I11_RS01295 (V3I11_01295) nrfE 256951..258858 (-) 1908 WP_042599597.1 heme lyase NrfEFG subunit NrfE -
  V3I11_RS01300 (V3I11_01300) suhB 258967..259770 (-) 804 WP_005664157.1 inositol-1-monophosphatase -
  V3I11_RS01305 (V3I11_01305) comN 259970..260482 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V3I11_RS01310 (V3I11_01310) comO 260482..261198 (+) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  V3I11_RS01315 (V3I11_01315) comP 261213..261896 (+) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  V3I11_RS01320 (V3I11_01320) comQ 261889..262176 (+) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=933291 V3I11_RS01305 WP_013526183.1 259970..260482(+) (comN) [Haemophilus influenzae strain P3_EMO]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=933291 V3I11_RS01305 WP_013526183.1 259970..260482(+) (comN) [Haemophilus influenzae strain P3_EMO]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAGCGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994